Hb_002477_170

Information

Type -
Description -
Location Contig2477: 123857-125519
Sequence    

Annotation

kegg
ID rcu:RCOM_0654550
description ankyrin repeat-containing protein, putative
nr
ID XP_002521356.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9ZU96
description Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=2 SV=1
trembl
ID B9S5T7
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0654550 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_170 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_065256_010 0.148158032 - - tryptophan synthase beta chain, putative [Ricinus communis]
3 Hb_000417_270 0.1634461675 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005599_020 0.1649379295 - - Protein MLO, putative [Ricinus communis]
5 Hb_135714_010 0.1690928987 - - hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
6 Hb_003349_020 0.1736690039 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
7 Hb_000140_250 0.1868905006 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
8 Hb_034585_070 0.1940528126 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
9 Hb_005888_060 0.1973106177 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
10 Hb_005888_050 0.2032832382 - - ATP binding protein, putative [Ricinus communis]
11 Hb_000479_340 0.207229095 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
12 Hb_140000_010 0.207448743 - - receptor-kinase, putative [Ricinus communis]
13 Hb_101133_040 0.2152985272 - - PREDICTED: nudix hydrolase 18, mitochondrial-like [Jatropha curcas]
14 Hb_000035_140 0.2170083116 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
15 Hb_005227_030 0.2170908416 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
16 Hb_002477_200 0.2223837652 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
17 Hb_002030_020 0.2230016007 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
18 Hb_023904_010 0.2231226936 - - -
19 Hb_005511_080 0.2268857511 - - Protein MLO, putative [Ricinus communis]
20 Hb_008202_010 0.2284920516 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002477_170 Hb_002477_170 Hb_065256_010 Hb_065256_010 Hb_002477_170--Hb_065256_010 Hb_000417_270 Hb_000417_270 Hb_002477_170--Hb_000417_270 Hb_005599_020 Hb_005599_020 Hb_002477_170--Hb_005599_020 Hb_135714_010 Hb_135714_010 Hb_002477_170--Hb_135714_010 Hb_003349_020 Hb_003349_020 Hb_002477_170--Hb_003349_020 Hb_000140_250 Hb_000140_250 Hb_002477_170--Hb_000140_250 Hb_005511_080 Hb_005511_080 Hb_065256_010--Hb_005511_080 Hb_065256_010--Hb_005599_020 Hb_034585_070 Hb_034585_070 Hb_065256_010--Hb_034585_070 Hb_005888_060 Hb_005888_060 Hb_065256_010--Hb_005888_060 Hb_000479_340 Hb_000479_340 Hb_065256_010--Hb_000479_340 Hb_103709_010 Hb_103709_010 Hb_065256_010--Hb_103709_010 Hb_000417_270--Hb_065256_010 Hb_000417_270--Hb_005599_020 Hb_000417_270--Hb_003349_020 Hb_002279_020 Hb_002279_020 Hb_000417_270--Hb_002279_020 Hb_005694_100 Hb_005694_100 Hb_000417_270--Hb_005694_100 Hb_005599_020--Hb_034585_070 Hb_140000_010 Hb_140000_010 Hb_005599_020--Hb_140000_010 Hb_018633_010 Hb_018633_010 Hb_005599_020--Hb_018633_010 Hb_000035_140 Hb_000035_140 Hb_005599_020--Hb_000035_140 Hb_000111_240 Hb_000111_240 Hb_005599_020--Hb_000111_240 Hb_005888_050 Hb_005888_050 Hb_135714_010--Hb_005888_050 Hb_008202_010 Hb_008202_010 Hb_135714_010--Hb_008202_010 Hb_074966_010 Hb_074966_010 Hb_135714_010--Hb_074966_010 Hb_005227_030 Hb_005227_030 Hb_135714_010--Hb_005227_030 Hb_031685_010 Hb_031685_010 Hb_135714_010--Hb_031685_010 Hb_000343_050 Hb_000343_050 Hb_135714_010--Hb_000343_050 Hb_023904_010 Hb_023904_010 Hb_003349_020--Hb_023904_010 Hb_001040_090 Hb_001040_090 Hb_003349_020--Hb_001040_090 Hb_003349_020--Hb_135714_010 Hb_131719_010 Hb_131719_010 Hb_003349_020--Hb_131719_010 Hb_001953_110 Hb_001953_110 Hb_003349_020--Hb_001953_110 Hb_003349_020--Hb_031685_010 Hb_000140_250--Hb_000035_140 Hb_000349_170 Hb_000349_170 Hb_000140_250--Hb_000349_170 Hb_115962_010 Hb_115962_010 Hb_000140_250--Hb_115962_010 Hb_007919_070 Hb_007919_070 Hb_000140_250--Hb_007919_070 Hb_005695_070 Hb_005695_070 Hb_000140_250--Hb_005695_070 Hb_000134_260 Hb_000134_260 Hb_000140_250--Hb_000134_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.015595 0.238149 0.560432 0.0252423 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.174736

CAGE analysis