Hb_002477_230

Information

Type -
Description -
Location Contig2477: 172293-173941
Sequence    

Annotation

kegg
ID rcu:RCOM_0654750
description hypothetical protein
nr
ID XP_012068920.1
description PREDICTED: verprolin [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9J0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24733 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_230 0.0 - - PREDICTED: verprolin [Jatropha curcas]
2 Hb_003253_010 0.1143011034 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
3 Hb_007810_050 0.1356610747 - - protein with unknown function [Ricinus communis]
4 Hb_007849_030 0.15513111 - - l-allo-threonine aldolase, putative [Ricinus communis]
5 Hb_002388_060 0.1717439046 - - conserved hypothetical protein [Ricinus communis]
6 Hb_175445_010 0.1720550607 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
7 Hb_010098_080 0.1759334508 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
8 Hb_003777_070 0.1763202286 - - -
9 Hb_000500_310 0.1767026167 - - -
10 Hb_000127_020 0.1789899129 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
11 Hb_000590_090 0.1868303913 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
12 Hb_001454_390 0.1902765025 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
13 Hb_001980_020 0.190868943 - - -
14 Hb_000416_100 0.1934750238 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
15 Hb_178968_150 0.1944069265 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000680_150 0.1967212179 - - PREDICTED: protein STU1-like [Jatropha curcas]
17 Hb_001993_020 0.1977253269 - - hypothetical protein JCGZ_02641 [Jatropha curcas]
18 Hb_010098_070 0.1979703957 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000959_360 0.1982018692 - - transporter, putative [Ricinus communis]
20 Hb_007545_210 0.199043289 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002477_230 Hb_002477_230 Hb_003253_010 Hb_003253_010 Hb_002477_230--Hb_003253_010 Hb_007810_050 Hb_007810_050 Hb_002477_230--Hb_007810_050 Hb_007849_030 Hb_007849_030 Hb_002477_230--Hb_007849_030 Hb_002388_060 Hb_002388_060 Hb_002477_230--Hb_002388_060 Hb_175445_010 Hb_175445_010 Hb_002477_230--Hb_175445_010 Hb_010098_080 Hb_010098_080 Hb_002477_230--Hb_010098_080 Hb_003253_010--Hb_010098_080 Hb_003777_070 Hb_003777_070 Hb_003253_010--Hb_003777_070 Hb_003253_010--Hb_007810_050 Hb_001454_390 Hb_001454_390 Hb_003253_010--Hb_001454_390 Hb_000500_310 Hb_000500_310 Hb_003253_010--Hb_000500_310 Hb_007810_050--Hb_003777_070 Hb_007810_050--Hb_010098_080 Hb_001980_020 Hb_001980_020 Hb_007810_050--Hb_001980_020 Hb_007810_050--Hb_175445_010 Hb_007849_030--Hb_001980_020 Hb_007849_030--Hb_003253_010 Hb_007849_030--Hb_175445_010 Hb_007849_030--Hb_007810_050 Hb_007849_030--Hb_003777_070 Hb_007545_210 Hb_007545_210 Hb_002388_060--Hb_007545_210 Hb_000523_020 Hb_000523_020 Hb_002388_060--Hb_000523_020 Hb_000416_100 Hb_000416_100 Hb_002388_060--Hb_000416_100 Hb_000270_400 Hb_000270_400 Hb_002388_060--Hb_000270_400 Hb_032264_130 Hb_032264_130 Hb_002388_060--Hb_032264_130 Hb_002388_060--Hb_001454_390 Hb_003756_010 Hb_003756_010 Hb_175445_010--Hb_003756_010 Hb_175445_010--Hb_003253_010 Hb_175445_010--Hb_001980_020 Hb_004060_010 Hb_004060_010 Hb_175445_010--Hb_004060_010 Hb_175445_010--Hb_010098_080 Hb_010098_080--Hb_000500_310 Hb_010098_080--Hb_003777_070 Hb_003018_180 Hb_003018_180 Hb_010098_080--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_010098_080--Hb_002298_040 Hb_002609_260 Hb_002609_260 Hb_010098_080--Hb_002609_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0659 0.450609 0.266483 0.341158 3.49265 3.15989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33048 5.1144 2.7665 0.365844 0.202012

CAGE analysis