Hb_002477_240

Information

Type -
Description -
Location Contig2477: 176220-177193
Sequence    

Annotation

kegg
ID pop:POPTR_0001s20590g
description hypothetical protein
nr
ID XP_006369277.1
description hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
swissprot
ID Q8L9S1
description 60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2
trembl
ID U5GTR3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s20590g PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l18a-like protein isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25803: 175770-176835 , PASA_asmbl_25804: 176437-177180 , PASA_asmbl_25805: 177751-179380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_240 0.0 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
2 Hb_001754_150 0.0618949944 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
3 Hb_042202_010 0.0619766681 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
4 Hb_004738_080 0.0710851012 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
5 Hb_000260_050 0.0740721127 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
6 Hb_000703_140 0.0759569336 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
7 Hb_009767_120 0.0762382232 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
8 Hb_000483_160 0.0770252247 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
9 Hb_000025_530 0.0775204212 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
10 Hb_003001_060 0.0782642393 - - wound-responsive family protein [Populus trichocarpa]
11 Hb_003878_190 0.0785774774 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
12 Hb_000260_080 0.0832403979 - - thioredoxin H-type 1 [Hevea brasiliensis]
13 Hb_000392_270 0.0840391668 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
14 Hb_002893_060 0.0842173365 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
15 Hb_001019_090 0.0872330049 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
16 Hb_001279_070 0.0877613742 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
17 Hb_001214_030 0.0892434007 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
18 Hb_004884_220 0.08973658 - - hypothetical protein 29 [Hevea brasiliensis]
19 Hb_000417_110 0.0904417747 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
20 Hb_000928_240 0.0908024593 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]

Gene co-expression network

sample Hb_002477_240 Hb_002477_240 Hb_001754_150 Hb_001754_150 Hb_002477_240--Hb_001754_150 Hb_042202_010 Hb_042202_010 Hb_002477_240--Hb_042202_010 Hb_004738_080 Hb_004738_080 Hb_002477_240--Hb_004738_080 Hb_000260_050 Hb_000260_050 Hb_002477_240--Hb_000260_050 Hb_000703_140 Hb_000703_140 Hb_002477_240--Hb_000703_140 Hb_009767_120 Hb_009767_120 Hb_002477_240--Hb_009767_120 Hb_001019_090 Hb_001019_090 Hb_001754_150--Hb_001019_090 Hb_001804_040 Hb_001804_040 Hb_001754_150--Hb_001804_040 Hb_001754_150--Hb_000260_050 Hb_001754_150--Hb_042202_010 Hb_000392_270 Hb_000392_270 Hb_001754_150--Hb_000392_270 Hb_001214_030 Hb_001214_030 Hb_042202_010--Hb_001214_030 Hb_000417_110 Hb_000417_110 Hb_042202_010--Hb_000417_110 Hb_000684_090 Hb_000684_090 Hb_042202_010--Hb_000684_090 Hb_000025_530 Hb_000025_530 Hb_042202_010--Hb_000025_530 Hb_004738_080--Hb_000703_140 Hb_000260_080 Hb_000260_080 Hb_004738_080--Hb_000260_080 Hb_000494_020 Hb_000494_020 Hb_004738_080--Hb_000494_020 Hb_004931_090 Hb_004931_090 Hb_004738_080--Hb_004931_090 Hb_003687_110 Hb_003687_110 Hb_004738_080--Hb_003687_110 Hb_007747_090 Hb_007747_090 Hb_000260_050--Hb_007747_090 Hb_000483_160 Hb_000483_160 Hb_000260_050--Hb_000483_160 Hb_004899_220 Hb_004899_220 Hb_000260_050--Hb_004899_220 Hb_000977_080 Hb_000977_080 Hb_000260_050--Hb_000977_080 Hb_000703_140--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000703_140--Hb_011794_070 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_009711_030 Hb_009711_030 Hb_000703_140--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_000703_140--Hb_000376_050 Hb_000883_050 Hb_000883_050 Hb_000703_140--Hb_000883_050 Hb_000933_180 Hb_000933_180 Hb_009767_120--Hb_000933_180 Hb_003874_020 Hb_003874_020 Hb_009767_120--Hb_003874_020 Hb_000690_080 Hb_000690_080 Hb_009767_120--Hb_000690_080 Hb_011360_140 Hb_011360_140 Hb_009767_120--Hb_011360_140 Hb_011828_050 Hb_011828_050 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.4115 3.72294 7.61233 6.58432 24.8313 23.2706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.8455 39.8695 15.0689 5.24349 3.97512

CAGE analysis