Hb_002477_250

Information

Type -
Description -
Location Contig2477: 179583-184172
Sequence    

Annotation

kegg
ID rcu:RCOM_0654760
description DNA-directed RNA polymerase I 49 kDa polypeptide, putative
nr
ID XP_002521367.1
description DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
swissprot
ID O14086
description DNA-directed RNA polymerase I subunit rpa49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa49 PE=2 SV=1
trembl
ID B9S5U8
description DNA-directed RNA polymerase I 49 kDa polypeptide, putative OS=Ricinus communis GN=RCOM_0654760 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase i subunit rpa49

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25806: 179572-184080 , PASA_asmbl_25807: 179549-179959 , PASA_asmbl_25808: 182820-183236
cDNA
(Sanger)
(ID:Location)		 012_O04.ab1: 179572-180034

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_250 0.0 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
2 Hb_002325_040 0.0535591162 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
3 Hb_000809_160 0.0574045254 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
4 Hb_001754_030 0.0641635919 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
5 Hb_003470_030 0.0654075285 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
6 Hb_000264_070 0.0669894047 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
7 Hb_001135_120 0.067539846 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
8 Hb_000069_130 0.0682293389 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
9 Hb_000926_010 0.0724382841 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
10 Hb_000723_110 0.072523755 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
11 Hb_032264_060 0.0733237614 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
12 Hb_005542_050 0.0735518352 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
13 Hb_003096_060 0.0747157947 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
14 Hb_003117_020 0.0770175606 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
15 Hb_140049_040 0.0780971576 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
16 Hb_000645_170 0.0782043438 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001231_090 0.079032824 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
18 Hb_000046_070 0.0791240186 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
19 Hb_000094_090 0.0793532125 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
20 Hb_008568_020 0.0802080241 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_002477_250 Hb_002477_250 Hb_002325_040 Hb_002325_040 Hb_002477_250--Hb_002325_040 Hb_000809_160 Hb_000809_160 Hb_002477_250--Hb_000809_160 Hb_001754_030 Hb_001754_030 Hb_002477_250--Hb_001754_030 Hb_003470_030 Hb_003470_030 Hb_002477_250--Hb_003470_030 Hb_000264_070 Hb_000264_070 Hb_002477_250--Hb_000264_070 Hb_001135_120 Hb_001135_120 Hb_002477_250--Hb_001135_120 Hb_002325_040--Hb_001135_120 Hb_005542_050 Hb_005542_050 Hb_002325_040--Hb_005542_050 Hb_140049_040 Hb_140049_040 Hb_002325_040--Hb_140049_040 Hb_184798_080 Hb_184798_080 Hb_002325_040--Hb_184798_080 Hb_001147_110 Hb_001147_110 Hb_002325_040--Hb_001147_110 Hb_000094_090 Hb_000094_090 Hb_000809_160--Hb_000094_090 Hb_031641_010 Hb_031641_010 Hb_000809_160--Hb_031641_010 Hb_000866_450 Hb_000866_450 Hb_000809_160--Hb_000866_450 Hb_000120_910 Hb_000120_910 Hb_000809_160--Hb_000120_910 Hb_000363_120 Hb_000363_120 Hb_000809_160--Hb_000363_120 Hb_001754_030--Hb_000809_160 Hb_023226_070 Hb_023226_070 Hb_001754_030--Hb_023226_070 Hb_060094_020 Hb_060094_020 Hb_001754_030--Hb_060094_020 Hb_032264_060 Hb_032264_060 Hb_001754_030--Hb_032264_060 Hb_000723_110 Hb_000723_110 Hb_001754_030--Hb_000723_110 Hb_002081_120 Hb_002081_120 Hb_003470_030--Hb_002081_120 Hb_000926_010 Hb_000926_010 Hb_003470_030--Hb_000926_010 Hb_003470_030--Hb_000264_070 Hb_002903_140 Hb_002903_140 Hb_003470_030--Hb_002903_140 Hb_096819_010 Hb_096819_010 Hb_003470_030--Hb_096819_010 Hb_004032_230 Hb_004032_230 Hb_000264_070--Hb_004032_230 Hb_000023_320 Hb_000023_320 Hb_000264_070--Hb_000023_320 Hb_001405_190 Hb_001405_190 Hb_000264_070--Hb_001405_190 Hb_001231_090 Hb_001231_090 Hb_000264_070--Hb_001231_090 Hb_102438_030 Hb_102438_030 Hb_000264_070--Hb_102438_030 Hb_004129_070 Hb_004129_070 Hb_001135_120--Hb_004129_070 Hb_009083_070 Hb_009083_070 Hb_001135_120--Hb_009083_070 Hb_003096_060 Hb_003096_060 Hb_001135_120--Hb_003096_060 Hb_001033_050 Hb_001033_050 Hb_001135_120--Hb_001033_050 Hb_001135_120--Hb_184798_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.4347 31.2875 21.1705 18.4405 19.0622 15.7536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9059 11.1795 8.17615 13.0668 12.8374

CAGE analysis