Hb_002477_260

Information

Type -
Description -
Location Contig2477: 186301-190377
Sequence    

Annotation

kegg
ID rcu:RCOM_0654770
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012068927.1
description PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
swissprot
ID Q9CAJ0
description Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1
trembl
ID A0A067KX96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24736 PE=3 SV=1
Gene Ontology
ID GO:0004722
description protein phosphatase 2c 16-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25809: 186392-190308 , PASA_asmbl_25810: 188318-188455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_260 0.0 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
2 Hb_127979_010 0.0912664874 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
3 Hb_002903_110 0.0949746621 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
4 Hb_011496_010 0.0986639585 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
5 Hb_003404_030 0.0987888206 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_001936_050 0.1002017717 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
7 Hb_000057_060 0.1039628405 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
8 Hb_026048_100 0.1052663215 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
9 Hb_003638_140 0.1075748774 - - protein binding protein, putative [Ricinus communis]
10 Hb_000784_090 0.1075953145 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
11 Hb_004126_010 0.1083245974 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
12 Hb_162275_010 0.1097947313 - - -
13 Hb_019613_020 0.1111722783 - - phospholipase C, putative [Ricinus communis]
14 Hb_000608_120 0.1141211437 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
15 Hb_001433_170 0.1149404429 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
16 Hb_002422_060 0.1154655899 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
17 Hb_000176_140 0.1162533272 - - PREDICTED: bystin [Jatropha curcas]
18 Hb_003638_030 0.1190007302 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
19 Hb_000358_080 0.1190505603 - - Ribonuclease 3 [Gossypium arboreum]
20 Hb_000005_050 0.1196307398 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]

Gene co-expression network

sample Hb_002477_260 Hb_002477_260 Hb_127979_010 Hb_127979_010 Hb_002477_260--Hb_127979_010 Hb_002903_110 Hb_002903_110 Hb_002477_260--Hb_002903_110 Hb_011496_010 Hb_011496_010 Hb_002477_260--Hb_011496_010 Hb_003404_030 Hb_003404_030 Hb_002477_260--Hb_003404_030 Hb_001936_050 Hb_001936_050 Hb_002477_260--Hb_001936_050 Hb_000057_060 Hb_000057_060 Hb_002477_260--Hb_000057_060 Hb_000176_140 Hb_000176_140 Hb_127979_010--Hb_000176_140 Hb_001433_170 Hb_001433_170 Hb_127979_010--Hb_001433_170 Hb_127979_010--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_026048_090 Hb_026048_090 Hb_127979_010--Hb_026048_090 Hb_127979_010--Hb_003404_030 Hb_000088_010 Hb_000088_010 Hb_002903_110--Hb_000088_010 Hb_000358_080 Hb_000358_080 Hb_002903_110--Hb_000358_080 Hb_000608_120 Hb_000608_120 Hb_002903_110--Hb_000608_120 Hb_001047_020 Hb_001047_020 Hb_002903_110--Hb_001047_020 Hb_004046_010 Hb_004046_010 Hb_002903_110--Hb_004046_010 Hb_002169_010 Hb_002169_010 Hb_011496_010--Hb_002169_010 Hb_029281_010 Hb_029281_010 Hb_011496_010--Hb_029281_010 Hb_000462_150 Hb_000462_150 Hb_011496_010--Hb_000462_150 Hb_002818_040 Hb_002818_040 Hb_011496_010--Hb_002818_040 Hb_003638_140 Hb_003638_140 Hb_011496_010--Hb_003638_140 Hb_011496_010--Hb_001936_050 Hb_003404_030--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_003404_030--Hb_002506_010 Hb_009510_030 Hb_009510_030 Hb_003404_030--Hb_009510_030 Hb_176022_020 Hb_176022_020 Hb_003404_030--Hb_176022_020 Hb_010174_130 Hb_010174_130 Hb_003404_030--Hb_010174_130 Hb_000490_030 Hb_000490_030 Hb_001936_050--Hb_000490_030 Hb_002874_070 Hb_002874_070 Hb_001936_050--Hb_002874_070 Hb_001936_050--Hb_000358_080 Hb_001936_050--Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_001936_050--Hb_000340_510 Hb_000057_060--Hb_001433_170 Hb_000057_060--Hb_009510_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_000057_060--Hb_002506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
507.198 125.917 21.6486 29.1216 386.814 551.363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
279.365 191.16 437.302 50.2795 41.3905

CAGE analysis