Hb_002478_020

Information

Type -
Description -
Location Contig2478: 13955-23952
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19120g
description POPTRDRAFT_226903; hypothetical protein
nr
ID XP_002315136.2
description hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
swissprot
ID O80920
description Abscisic acid receptor PYL4 OS=Arabidopsis thaliana GN=PYL4 PE=1 SV=1
trembl
ID B9HSJ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19120g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25817: 14222-14522 , PASA_asmbl_25818: 22934-23987
cDNA
(Sanger)
(ID:Location)		 009_H06.ab1: 13981-14520 , 045_C16.ab1: 23364-23987

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002478_020 0.0 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
2 Hb_004942_020 0.1329229575 - - Potassium transporter, putative [Ricinus communis]
3 Hb_058143_010 0.1374462701 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
4 Hb_039946_010 0.159093518 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
5 Hb_001143_070 0.1603811398 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
6 Hb_000920_320 0.1632089715 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
7 Hb_012586_020 0.171009635 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
8 Hb_003226_240 0.1718998439 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
9 Hb_010589_050 0.172060467 - - -
10 Hb_001396_090 0.1746635095 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
11 Hb_000329_660 0.1783995789 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
12 Hb_003060_040 0.1799390371 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
13 Hb_003095_070 0.1810956645 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
14 Hb_001433_100 0.1839002064 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
15 Hb_000316_100 0.1855463379 - - protein with unknown function [Ricinus communis]
16 Hb_001186_070 0.1858955966 - - PREDICTED: F-box protein FBW2-like [Gossypium raimondii]
17 Hb_002989_040 0.1876151091 - - hypothetical protein 1 [Hevea brasiliensis]
18 Hb_001776_170 0.1901441514 - - conserved hypothetical protein [Ricinus communis]
19 Hb_148850_010 0.1942800633 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
20 Hb_001511_140 0.194464282 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]

Gene co-expression network

sample Hb_002478_020 Hb_002478_020 Hb_004942_020 Hb_004942_020 Hb_002478_020--Hb_004942_020 Hb_058143_010 Hb_058143_010 Hb_002478_020--Hb_058143_010 Hb_039946_010 Hb_039946_010 Hb_002478_020--Hb_039946_010 Hb_001143_070 Hb_001143_070 Hb_002478_020--Hb_001143_070 Hb_000920_320 Hb_000920_320 Hb_002478_020--Hb_000920_320 Hb_012586_020 Hb_012586_020 Hb_002478_020--Hb_012586_020 Hb_004942_020--Hb_058143_010 Hb_004942_020--Hb_012586_020 Hb_113906_010 Hb_113906_010 Hb_004942_020--Hb_113906_010 Hb_000352_180 Hb_000352_180 Hb_004942_020--Hb_000352_180 Hb_004942_020--Hb_001143_070 Hb_058143_010--Hb_000352_180 Hb_010589_050 Hb_010589_050 Hb_058143_010--Hb_010589_050 Hb_058143_010--Hb_012586_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_039946_010--Hb_010589_050 Hb_039946_010--Hb_012586_020 Hb_039946_010--Hb_058143_010 Hb_039946_010--Hb_004942_020 Hb_039946_010--Hb_000352_180 Hb_002989_040 Hb_002989_040 Hb_001143_070--Hb_002989_040 Hb_000103_030 Hb_000103_030 Hb_001143_070--Hb_000103_030 Hb_001348_230 Hb_001348_230 Hb_001143_070--Hb_001348_230 Hb_002290_050 Hb_002290_050 Hb_001143_070--Hb_002290_050 Hb_000352_160 Hb_000352_160 Hb_001143_070--Hb_000352_160 Hb_003913_050 Hb_003913_050 Hb_000920_320--Hb_003913_050 Hb_001396_090 Hb_001396_090 Hb_000920_320--Hb_001396_090 Hb_003226_240 Hb_003226_240 Hb_000920_320--Hb_003226_240 Hb_003060_040 Hb_003060_040 Hb_000920_320--Hb_003060_040 Hb_000920_320--Hb_002989_040 Hb_000270_620 Hb_000270_620 Hb_000920_320--Hb_000270_620 Hb_012586_020--Hb_010589_050 Hb_012586_020--Hb_002290_050 Hb_012586_020--Hb_000352_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35665 3.42168 0.0153611 0.0626537 1.31805 0.33247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.188 51.5617 19.6365 3.05939 0.216213

CAGE analysis