Hb_002478_040

Information

Type transcription factor
Description TF Family: ERF
Location Contig2478: 40628-41866
Sequence    

Annotation

kegg
ID rcu:RCOM_0687530
description Dehydration-responsive element-binding protein 2C, putative
nr
ID XP_002520794.1
description Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
swissprot
ID Q8LFR2
description Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2
trembl
ID B9S475
description Dehydration-responsive element-binding protein 2C, putative OS=Ricinus communis GN=RCOM_0687530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25825: 40176-42910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002478_040 0.0 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
2 Hb_004635_030 0.0976125698 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
3 Hb_000979_060 0.1127796472 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
4 Hb_000152_760 0.1305980657 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000579_190 0.1313688133 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
6 Hb_013405_150 0.1336140516 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
7 Hb_003605_050 0.1370168154 - - protein with unknown function [Ricinus communis]
8 Hb_005194_020 0.1390032377 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
9 Hb_008695_090 0.140516914 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
10 Hb_174829_020 0.1431996547 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
11 Hb_004236_030 0.1452631658 - - unknown [Lotus japonicus]
12 Hb_006538_130 0.1461580671 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
13 Hb_000291_030 0.1461601823 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
14 Hb_000343_150 0.1499807055 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
15 Hb_000009_220 0.1510091252 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
16 Hb_000115_340 0.1529670021 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
17 Hb_000169_080 0.1542080934 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
18 Hb_002631_320 0.1546435675 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
19 Hb_001245_050 0.1555012093 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
20 Hb_004724_220 0.1564613367 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]

Gene co-expression network

sample Hb_002478_040 Hb_002478_040 Hb_004635_030 Hb_004635_030 Hb_002478_040--Hb_004635_030 Hb_000979_060 Hb_000979_060 Hb_002478_040--Hb_000979_060 Hb_000152_760 Hb_000152_760 Hb_002478_040--Hb_000152_760 Hb_000579_190 Hb_000579_190 Hb_002478_040--Hb_000579_190 Hb_013405_150 Hb_013405_150 Hb_002478_040--Hb_013405_150 Hb_003605_050 Hb_003605_050 Hb_002478_040--Hb_003605_050 Hb_005194_020 Hb_005194_020 Hb_004635_030--Hb_005194_020 Hb_006538_130 Hb_006538_130 Hb_004635_030--Hb_006538_130 Hb_008695_090 Hb_008695_090 Hb_004635_030--Hb_008695_090 Hb_000291_030 Hb_000291_030 Hb_004635_030--Hb_000291_030 Hb_001477_070 Hb_001477_070 Hb_004635_030--Hb_001477_070 Hb_000684_100 Hb_000684_100 Hb_000979_060--Hb_000684_100 Hb_000979_060--Hb_005194_020 Hb_002311_480 Hb_002311_480 Hb_000979_060--Hb_002311_480 Hb_000009_220 Hb_000009_220 Hb_000979_060--Hb_000009_220 Hb_001322_020 Hb_001322_020 Hb_000979_060--Hb_001322_020 Hb_000979_060--Hb_000579_190 Hb_000152_150 Hb_000152_150 Hb_000152_760--Hb_000152_150 Hb_010368_080 Hb_010368_080 Hb_000152_760--Hb_010368_080 Hb_006132_040 Hb_006132_040 Hb_000152_760--Hb_006132_040 Hb_091226_010 Hb_091226_010 Hb_000152_760--Hb_091226_010 Hb_000152_760--Hb_000979_060 Hb_001005_020 Hb_001005_020 Hb_000579_190--Hb_001005_020 Hb_000375_290 Hb_000375_290 Hb_000579_190--Hb_000375_290 Hb_001558_060 Hb_001558_060 Hb_000579_190--Hb_001558_060 Hb_004236_030 Hb_004236_030 Hb_000579_190--Hb_004236_030 Hb_004943_030 Hb_004943_030 Hb_000579_190--Hb_004943_030 Hb_000579_190--Hb_008695_090 Hb_000077_120 Hb_000077_120 Hb_013405_150--Hb_000077_120 Hb_000890_010 Hb_000890_010 Hb_013405_150--Hb_000890_010 Hb_044155_010 Hb_044155_010 Hb_013405_150--Hb_044155_010 Hb_013405_150--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_013405_150--Hb_000139_220 Hb_000343_150 Hb_000343_150 Hb_013405_150--Hb_000343_150 Hb_003605_050--Hb_004943_030 Hb_000227_270 Hb_000227_270 Hb_003605_050--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_003605_050--Hb_023226_070 Hb_000115_340 Hb_000115_340 Hb_003605_050--Hb_000115_340 Hb_008165_030 Hb_008165_030 Hb_003605_050--Hb_008165_030 Hb_002903_140 Hb_002903_140 Hb_003605_050--Hb_002903_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.1068 121.708 159.355 32.83 47.9074 35.4448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.116 23.654 62.1608 28.7914 20.5709

CAGE analysis