Hb_002481_060

Information

Type -
Description -
Location Contig2481: 41363-55553
Sequence    

Annotation

kegg
ID rcu:RCOM_1118020
description Transmembrane protein, putative
nr
ID XP_012080635.1
description PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
swissprot
ID Q04835
description Uncharacterized membrane protein YMR253C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR253C PE=1 SV=1
trembl
ID A0A067K3W5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13745 PE=4 SV=1
Gene Ontology
ID GO:0016020
description integral membrane family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25831: 41238-42003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002481_060 0.0 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
2 Hb_006683_070 0.0887598594 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
3 Hb_025098_010 0.0999397752 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_185255_010 0.1013407216 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
5 Hb_000684_210 0.1040171765 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
6 Hb_000525_090 0.1050115067 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
7 Hb_000179_270 0.1083297291 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
8 Hb_004935_060 0.1094740518 - - Uncharacterized protein isoform 2 [Theobroma cacao]
9 Hb_170138_010 0.1109141311 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002289_080 0.1114025078 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
11 Hb_005144_050 0.1118910707 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
12 Hb_000297_120 0.1126057899 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
13 Hb_004881_030 0.1135953992 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
14 Hb_000004_020 0.1139630039 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000087_070 0.1166060402 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
16 Hb_002820_020 0.1172098161 - - hypothetical protein VITISV_005587 [Vitis vinifera]
17 Hb_005800_030 0.1176930144 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
18 Hb_109000_020 0.1191468901 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
19 Hb_000483_300 0.1197625076 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
20 Hb_001269_190 0.1201075453 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]

Gene co-expression network

sample Hb_002481_060 Hb_002481_060 Hb_006683_070 Hb_006683_070 Hb_002481_060--Hb_006683_070 Hb_025098_010 Hb_025098_010 Hb_002481_060--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_002481_060--Hb_185255_010 Hb_000684_210 Hb_000684_210 Hb_002481_060--Hb_000684_210 Hb_000525_090 Hb_000525_090 Hb_002481_060--Hb_000525_090 Hb_000179_270 Hb_000179_270 Hb_002481_060--Hb_000179_270 Hb_006683_070--Hb_185255_010 Hb_015934_120 Hb_015934_120 Hb_006683_070--Hb_015934_120 Hb_000297_120 Hb_000297_120 Hb_006683_070--Hb_000297_120 Hb_001269_190 Hb_001269_190 Hb_006683_070--Hb_001269_190 Hb_006683_070--Hb_025098_010 Hb_005800_030 Hb_005800_030 Hb_006683_070--Hb_005800_030 Hb_025098_010--Hb_185255_010 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_001307_030 Hb_001307_030 Hb_025098_010--Hb_001307_030 Hb_005144_050 Hb_005144_050 Hb_025098_010--Hb_005144_050 Hb_002289_080 Hb_002289_080 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020 Hb_185255_010--Hb_005144_050 Hb_185255_010--Hb_001269_190 Hb_001489_110 Hb_001489_110 Hb_185255_010--Hb_001489_110 Hb_185255_010--Hb_001307_030 Hb_000645_280 Hb_000645_280 Hb_000684_210--Hb_000645_280 Hb_000359_210 Hb_000359_210 Hb_000684_210--Hb_000359_210 Hb_170138_010 Hb_170138_010 Hb_000684_210--Hb_170138_010 Hb_001662_100 Hb_001662_100 Hb_000684_210--Hb_001662_100 Hb_003106_190 Hb_003106_190 Hb_000684_210--Hb_003106_190 Hb_009569_040 Hb_009569_040 Hb_000684_210--Hb_009569_040 Hb_007383_020 Hb_007383_020 Hb_000525_090--Hb_007383_020 Hb_003206_110 Hb_003206_110 Hb_000525_090--Hb_003206_110 Hb_004046_030 Hb_004046_030 Hb_000525_090--Hb_004046_030 Hb_000309_050 Hb_000309_050 Hb_000525_090--Hb_000309_050 Hb_000613_070 Hb_000613_070 Hb_000525_090--Hb_000613_070 Hb_000087_070 Hb_000087_070 Hb_000179_270--Hb_000087_070 Hb_002272_270 Hb_002272_270 Hb_000179_270--Hb_002272_270 Hb_002820_020 Hb_002820_020 Hb_000179_270--Hb_002820_020 Hb_001189_070 Hb_001189_070 Hb_000179_270--Hb_001189_070 Hb_002042_150 Hb_002042_150 Hb_000179_270--Hb_002042_150 Hb_000179_270--Hb_001269_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34289 1.14102 1.87138 6.36015 2.37909 3.2272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.91668 4.18352 2.11006 3.84639 6.03591

CAGE analysis