Hb_002481_080

Information

Type -
Description -
Location Contig2481: 67285-73946
Sequence    

Annotation

kegg
ID rcu:RCOM_0679510
description shikimate dehydrogenase, putative (EC:1.1.1.25 4.2.1.10)
nr
ID XP_012069424.1
description PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9SQT8
description Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1
trembl
ID A0A067L7F9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02032 PE=3 SV=1
Gene Ontology
ID GO:0009570
description bifunctional 3-dehydroquinate dehydratase shikimate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25832: 67215-73926
cDNA
(Sanger)
(ID:Location)		 026_K21.ab1: 73122-73926 , 045_K13.ab1: 71518-73560 , 048_M07.ab1: 71519-73732

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002481_080 0.0 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
2 Hb_028227_070 0.0618793813 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
3 Hb_000028_180 0.0647951294 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
4 Hb_011485_070 0.0651485593 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
5 Hb_001016_120 0.0654431164 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
6 Hb_000645_090 0.0665064047 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002000_080 0.0680675019 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
8 Hb_010964_040 0.0683137873 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
9 Hb_022115_020 0.0740991112 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
10 Hb_002078_350 0.0746199041 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
11 Hb_000477_060 0.0750385854 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
12 Hb_155159_020 0.0754707612 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
13 Hb_007479_040 0.0770484678 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000185_030 0.0771938213 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
15 Hb_002197_050 0.0773569166 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
16 Hb_000049_210 0.0776521162 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
17 Hb_003847_030 0.0778081989 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
18 Hb_000483_260 0.0785337449 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
19 Hb_000181_400 0.0787366326 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
20 Hb_000015_040 0.0788039986 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002481_080 Hb_002481_080 Hb_028227_070 Hb_028227_070 Hb_002481_080--Hb_028227_070 Hb_000028_180 Hb_000028_180 Hb_002481_080--Hb_000028_180 Hb_011485_070 Hb_011485_070 Hb_002481_080--Hb_011485_070 Hb_001016_120 Hb_001016_120 Hb_002481_080--Hb_001016_120 Hb_000645_090 Hb_000645_090 Hb_002481_080--Hb_000645_090 Hb_002000_080 Hb_002000_080 Hb_002481_080--Hb_002000_080 Hb_000504_070 Hb_000504_070 Hb_028227_070--Hb_000504_070 Hb_028227_070--Hb_001016_120 Hb_010964_040 Hb_010964_040 Hb_028227_070--Hb_010964_040 Hb_001584_120 Hb_001584_120 Hb_028227_070--Hb_001584_120 Hb_155159_020 Hb_155159_020 Hb_028227_070--Hb_155159_020 Hb_001252_120 Hb_001252_120 Hb_000028_180--Hb_001252_120 Hb_004324_130 Hb_004324_130 Hb_000028_180--Hb_004324_130 Hb_007479_040 Hb_007479_040 Hb_000028_180--Hb_007479_040 Hb_022115_020 Hb_022115_020 Hb_000028_180--Hb_022115_020 Hb_004724_150 Hb_004724_150 Hb_000028_180--Hb_004724_150 Hb_000185_040 Hb_000185_040 Hb_011485_070--Hb_000185_040 Hb_001341_170 Hb_001341_170 Hb_011485_070--Hb_001341_170 Hb_004032_150 Hb_004032_150 Hb_011485_070--Hb_004032_150 Hb_000092_170 Hb_000092_170 Hb_011485_070--Hb_000092_170 Hb_002675_070 Hb_002675_070 Hb_011485_070--Hb_002675_070 Hb_000116_270 Hb_000116_270 Hb_001016_120--Hb_000116_270 Hb_149985_010 Hb_149985_010 Hb_001016_120--Hb_149985_010 Hb_084646_010 Hb_084646_010 Hb_001016_120--Hb_084646_010 Hb_005054_110 Hb_005054_110 Hb_001016_120--Hb_005054_110 Hb_001377_510 Hb_001377_510 Hb_000645_090--Hb_001377_510 Hb_000645_090--Hb_155159_020 Hb_000645_090--Hb_022115_020 Hb_000477_060 Hb_000477_060 Hb_000645_090--Hb_000477_060 Hb_005188_080 Hb_005188_080 Hb_000645_090--Hb_005188_080 Hb_165928_030 Hb_165928_030 Hb_002000_080--Hb_165928_030 Hb_011671_180 Hb_011671_180 Hb_002000_080--Hb_011671_180 Hb_073973_100 Hb_073973_100 Hb_002000_080--Hb_073973_100 Hb_006907_130 Hb_006907_130 Hb_002000_080--Hb_006907_130 Hb_003294_070 Hb_003294_070 Hb_002000_080--Hb_003294_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2309 13.2789 10.5306 18.8037 14.3539 18.6718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8483 22.6006 25.4226 26.8746 14.2913

CAGE analysis