Hb_002482_030

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig2482: 28627-30979
Sequence    

Annotation

kegg
ID mtr:MTR_5g030130
description hypothetical protein
nr
ID ACJ84547.1
description unknown [Medicago truncatula]
swissprot
ID -
description -
trembl
ID B7FIG8
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25833: 28597-31334
cDNA
(Sanger)
(ID:Location)		 005_D24.ab1: 29396-31334

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002482_030 0.0 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
2 Hb_002804_010 0.110784283 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
3 Hb_005183_140 0.1159745207 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
4 Hb_002249_050 0.1189007857 - - Auxin response factor, putative [Ricinus communis]
5 Hb_002387_040 0.1232954948 - - protein transporter, putative [Ricinus communis]
6 Hb_002154_020 0.1264137058 - - protein with unknown function [Ricinus communis]
7 Hb_002400_160 0.1266287134 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
8 Hb_000753_140 0.1277218459 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
9 Hb_007313_070 0.1282183406 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
10 Hb_000613_220 0.1283996048 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
11 Hb_121089_020 0.1297089406 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
12 Hb_015807_080 0.1341509242 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
13 Hb_005288_050 0.1368793003 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
14 Hb_002248_120 0.1444747721 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
15 Hb_003725_010 0.1455201765 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
16 Hb_019863_060 0.1460621764 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
17 Hb_048755_020 0.1461908052 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
18 Hb_024714_070 0.1462027937 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
19 Hb_000699_210 0.1474788273 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
20 Hb_003001_070 0.1484715973 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]

Gene co-expression network

sample Hb_002482_030 Hb_002482_030 Hb_002804_010 Hb_002804_010 Hb_002482_030--Hb_002804_010 Hb_005183_140 Hb_005183_140 Hb_002482_030--Hb_005183_140 Hb_002249_050 Hb_002249_050 Hb_002482_030--Hb_002249_050 Hb_002387_040 Hb_002387_040 Hb_002482_030--Hb_002387_040 Hb_002154_020 Hb_002154_020 Hb_002482_030--Hb_002154_020 Hb_002400_160 Hb_002400_160 Hb_002482_030--Hb_002400_160 Hb_005288_050 Hb_005288_050 Hb_002804_010--Hb_005288_050 Hb_002804_010--Hb_002387_040 Hb_000418_050 Hb_000418_050 Hb_002804_010--Hb_000418_050 Hb_024714_070 Hb_024714_070 Hb_002804_010--Hb_024714_070 Hb_000753_140 Hb_000753_140 Hb_002804_010--Hb_000753_140 Hb_001951_240 Hb_001951_240 Hb_002804_010--Hb_001951_240 Hb_000340_360 Hb_000340_360 Hb_005183_140--Hb_000340_360 Hb_000404_030 Hb_000404_030 Hb_005183_140--Hb_000404_030 Hb_014006_010 Hb_014006_010 Hb_005183_140--Hb_014006_010 Hb_002249_030 Hb_002249_030 Hb_005183_140--Hb_002249_030 Hb_001499_070 Hb_001499_070 Hb_005183_140--Hb_001499_070 Hb_006794_020 Hb_006794_020 Hb_005183_140--Hb_006794_020 Hb_159295_010 Hb_159295_010 Hb_002249_050--Hb_159295_010 Hb_005765_040 Hb_005765_040 Hb_002249_050--Hb_005765_040 Hb_002249_050--Hb_002400_160 Hb_002249_050--Hb_002154_020 Hb_000613_220 Hb_000613_220 Hb_002249_050--Hb_000613_220 Hb_001488_040 Hb_001488_040 Hb_002249_050--Hb_001488_040 Hb_002248_120 Hb_002248_120 Hb_002387_040--Hb_002248_120 Hb_000699_210 Hb_000699_210 Hb_002387_040--Hb_000699_210 Hb_002387_040--Hb_024714_070 Hb_002387_040--Hb_000418_050 Hb_002387_040--Hb_005288_050 Hb_002154_020--Hb_002387_040 Hb_002477_120 Hb_002477_120 Hb_002154_020--Hb_002477_120 Hb_002154_020--Hb_002400_160 Hb_004032_310 Hb_004032_310 Hb_002154_020--Hb_004032_310 Hb_019863_060 Hb_019863_060 Hb_002154_020--Hb_019863_060 Hb_002400_160--Hb_001488_040 Hb_002897_050 Hb_002897_050 Hb_002400_160--Hb_002897_050 Hb_007313_070 Hb_007313_070 Hb_002400_160--Hb_007313_070 Hb_000126_070 Hb_000126_070 Hb_002400_160--Hb_000126_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9196 196.264 101.543 50.1411 18.1578 26.5841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.17603 38.2535 18.6768 46.7438 88.0538

CAGE analysis