Hb_002482_040

Information

Type -
Description -
Location Contig2482: 74943-77137
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02620g
description hypothetical protein
nr
ID XP_012082616.1
description PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19501 PE=4 SV=1
Gene Ontology
ID GO:0004601
description phospholipid hydroperoxide glutathione peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25835: 74950-90861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002482_040 0.0 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
2 Hb_076175_010 0.1478340815 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
3 Hb_001638_240 0.1517335925 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
4 Hb_005588_070 0.1561896602 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
5 Hb_000672_120 0.1591685787 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
6 Hb_030982_020 0.1616851474 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
7 Hb_000174_040 0.1620332797 - - -
8 Hb_025190_010 0.1663465917 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001504_080 0.1670980191 - - golgi snare 11 protein, putative [Ricinus communis]
10 Hb_000493_010 0.1684409846 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
11 Hb_000313_010 0.1692480496 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_001935_150 0.1728327905 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
13 Hb_002259_160 0.1741398045 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
14 Hb_007894_230 0.1766626587 - - 30S ribosomal protein S14, putative [Ricinus communis]
15 Hb_012675_070 0.1783552893 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
16 Hb_000648_030 0.1789316002 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
17 Hb_002078_260 0.1796907713 - - unknown [Populus trichocarpa]
18 Hb_009372_030 0.1801533263 - - 50S ribosomal protein L6, putative [Ricinus communis]
19 Hb_002284_050 0.1812842293 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
20 Hb_175976_010 0.1815990521 - - -

Gene co-expression network

sample Hb_002482_040 Hb_002482_040 Hb_076175_010 Hb_076175_010 Hb_002482_040--Hb_076175_010 Hb_001638_240 Hb_001638_240 Hb_002482_040--Hb_001638_240 Hb_005588_070 Hb_005588_070 Hb_002482_040--Hb_005588_070 Hb_000672_120 Hb_000672_120 Hb_002482_040--Hb_000672_120 Hb_030982_020 Hb_030982_020 Hb_002482_040--Hb_030982_020 Hb_000174_040 Hb_000174_040 Hb_002482_040--Hb_000174_040 Hb_009372_030 Hb_009372_030 Hb_076175_010--Hb_009372_030 Hb_001935_150 Hb_001935_150 Hb_076175_010--Hb_001935_150 Hb_076175_010--Hb_030982_020 Hb_002078_260 Hb_002078_260 Hb_076175_010--Hb_002078_260 Hb_010449_040 Hb_010449_040 Hb_076175_010--Hb_010449_040 Hb_003663_070 Hb_003663_070 Hb_001638_240--Hb_003663_070 Hb_001638_240--Hb_001935_150 Hb_004659_060 Hb_004659_060 Hb_001638_240--Hb_004659_060 Hb_002843_210 Hb_002843_210 Hb_001638_240--Hb_002843_210 Hb_001638_240--Hb_005588_070 Hb_001638_240--Hb_000672_120 Hb_004336_050 Hb_004336_050 Hb_005588_070--Hb_004336_050 Hb_012675_070 Hb_012675_070 Hb_005588_070--Hb_012675_070 Hb_180301_010 Hb_180301_010 Hb_005588_070--Hb_180301_010 Hb_001504_080 Hb_001504_080 Hb_005588_070--Hb_001504_080 Hb_005588_070--Hb_000672_120 Hb_002878_010 Hb_002878_010 Hb_005588_070--Hb_002878_010 Hb_000672_120--Hb_004336_050 Hb_007594_090 Hb_007594_090 Hb_000672_120--Hb_007594_090 Hb_172706_030 Hb_172706_030 Hb_000672_120--Hb_172706_030 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_001307_090 Hb_001307_090 Hb_000672_120--Hb_001307_090 Hb_030982_020--Hb_002078_260 Hb_011214_100 Hb_011214_100 Hb_030982_020--Hb_011214_100 Hb_098852_010 Hb_098852_010 Hb_030982_020--Hb_098852_010 Hb_041205_010 Hb_041205_010 Hb_030982_020--Hb_041205_010 Hb_132180_010 Hb_132180_010 Hb_030982_020--Hb_132180_010 Hb_009270_030 Hb_009270_030 Hb_030982_020--Hb_009270_030 Hb_025190_010 Hb_025190_010 Hb_000174_040--Hb_025190_010 Hb_001195_490 Hb_001195_490 Hb_000174_040--Hb_001195_490 Hb_000174_040--Hb_076175_010 Hb_000174_040--Hb_002078_260 Hb_027760_020 Hb_027760_020 Hb_000174_040--Hb_027760_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.20991 1.64244 3.87784 42.2927 4.98073 72.3667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.0217 59.3707 54.3702 10.5348 20.0921

CAGE analysis