Hb_002486_010

Information

Type -
Description -
Location Contig2486: 6207-12823
Sequence    

Annotation

kegg
ID rcu:RCOM_0687180
description cohesin subunit rad21, putative
nr
ID XP_012086901.1
description PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
swissprot
ID Q9S7T7
description Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana GN=SYN1 PE=2 SV=2
trembl
ID A0A067LKA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01219 PE=4 SV=1
Gene Ontology
ID GO:0000228
description sister chromatid cohesion 1 protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002486_010 0.0 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
2 Hb_002805_020 0.1422201228 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
3 Hb_007747_180 0.1872951485 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
4 Hb_082182_010 0.1983485192 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
5 Hb_013766_010 0.2048570729 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
6 Hb_007747_140 0.2121053843 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
7 Hb_000011_420 0.2170467116 - - PREDICTED: GDSL esterase/lipase At1g29660-like [Citrus sinensis]
8 Hb_002291_010 0.2205978288 - - ring finger protein, putative [Ricinus communis]
9 Hb_003106_120 0.225145895 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
10 Hb_031862_040 0.2347668658 - - purine transporter, putative [Ricinus communis]
11 Hb_006453_010 0.2386486696 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
12 Hb_005439_040 0.2389135708 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
13 Hb_002660_060 0.2401810888 - - PREDICTED: uncharacterized protein LOC105642215 [Jatropha curcas]
14 Hb_000260_290 0.245138776 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
15 Hb_000297_020 0.2467078095 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
16 Hb_001621_070 0.2514808863 - - hypothetical protein POPTR_0008s05890g [Populus trichocarpa]
17 Hb_004020_060 0.2534873034 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_001565_110 0.2537678127 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
19 Hb_007153_040 0.2600605996 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
20 Hb_001486_030 0.2601633412 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002486_010 Hb_002486_010 Hb_002805_020 Hb_002805_020 Hb_002486_010--Hb_002805_020 Hb_007747_180 Hb_007747_180 Hb_002486_010--Hb_007747_180 Hb_082182_010 Hb_082182_010 Hb_002486_010--Hb_082182_010 Hb_013766_010 Hb_013766_010 Hb_002486_010--Hb_013766_010 Hb_007747_140 Hb_007747_140 Hb_002486_010--Hb_007747_140 Hb_000011_420 Hb_000011_420 Hb_002486_010--Hb_000011_420 Hb_002660_060 Hb_002660_060 Hb_002805_020--Hb_002660_060 Hb_000671_160 Hb_000671_160 Hb_002805_020--Hb_000671_160 Hb_002805_020--Hb_007747_180 Hb_002805_020--Hb_013766_010 Hb_000297_020 Hb_000297_020 Hb_002805_020--Hb_000297_020 Hb_007747_180--Hb_082182_010 Hb_002291_010 Hb_002291_010 Hb_007747_180--Hb_002291_010 Hb_007747_180--Hb_013766_010 Hb_007747_180--Hb_000297_020 Hb_005439_040 Hb_005439_040 Hb_082182_010--Hb_005439_040 Hb_043485_010 Hb_043485_010 Hb_082182_010--Hb_043485_010 Hb_015690_020 Hb_015690_020 Hb_082182_010--Hb_015690_020 Hb_024468_020 Hb_024468_020 Hb_082182_010--Hb_024468_020 Hb_001565_110 Hb_001565_110 Hb_013766_010--Hb_001565_110 Hb_001079_020 Hb_001079_020 Hb_013766_010--Hb_001079_020 Hb_002253_060 Hb_002253_060 Hb_013766_010--Hb_002253_060 Hb_013766_010--Hb_082182_010 Hb_007747_140--Hb_024468_020 Hb_004328_040 Hb_004328_040 Hb_007747_140--Hb_004328_040 Hb_011056_020 Hb_011056_020 Hb_007747_140--Hb_011056_020 Hb_005224_010 Hb_005224_010 Hb_007747_140--Hb_005224_010 Hb_007747_140--Hb_000297_020 Hb_002527_050 Hb_002527_050 Hb_000011_420--Hb_002527_050 Hb_000011_420--Hb_002291_010 Hb_149515_010 Hb_149515_010 Hb_000011_420--Hb_149515_010 Hb_000853_060 Hb_000853_060 Hb_000011_420--Hb_000853_060 Hb_028811_010 Hb_028811_010 Hb_000011_420--Hb_028811_010 Hb_011909_010 Hb_011909_010 Hb_000011_420--Hb_011909_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.021742 0.122259 0.0170204 0.0168551 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0494422 0.116704 0.183996 0.23234 0.0410025

CAGE analysis