Hb_002486_040

Information

Type -
Description -
Location Contig2486: 37307-37973
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25873: 37328-37932 , PASA_asmbl_25874: 38370-44279 , PASA_asmbl_25875: 38370-42688
cDNA
(Sanger)
(ID:Location)		 012_P13.ab1: 37328-37917 , 019_A06.ab1: 38392-39532 , 021_A17.ab1: 38370-39532 , 031_I08.ab1: 37433-37920 , 049_E06.ab1: 37397-37914

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002486_040 0.0 - - -
2 Hb_003126_080 0.0868061178 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
3 Hb_007590_050 0.0873935621 - - NudC domain-containing protein, putative [Ricinus communis]
4 Hb_002685_170 0.0900496137 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
5 Hb_004491_010 0.0951054284 - - 60S ribosomal protein L51, putative [Ricinus communis]
6 Hb_003185_080 0.0958691583 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
7 Hb_000537_080 0.0992207252 - - conserved hypothetical protein [Ricinus communis]
8 Hb_028995_040 0.099961928 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
9 Hb_000915_160 0.1022480504 - - PREDICTED: histone H1 [Jatropha curcas]
10 Hb_001534_050 0.1033707024 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
11 Hb_000462_130 0.1036829218 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
12 Hb_003125_200 0.1037270092 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
13 Hb_000656_400 0.1046040523 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
14 Hb_000698_030 0.1047538874 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
15 Hb_001766_110 0.1048005083 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
16 Hb_015279_010 0.1050960454 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
17 Hb_000307_090 0.1052923612 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
18 Hb_001481_090 0.1068796309 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
19 Hb_002234_140 0.1072521113 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
20 Hb_000589_260 0.107535033 - - 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002486_040 Hb_002486_040 Hb_003126_080 Hb_003126_080 Hb_002486_040--Hb_003126_080 Hb_007590_050 Hb_007590_050 Hb_002486_040--Hb_007590_050 Hb_002685_170 Hb_002685_170 Hb_002486_040--Hb_002685_170 Hb_004491_010 Hb_004491_010 Hb_002486_040--Hb_004491_010 Hb_003185_080 Hb_003185_080 Hb_002486_040--Hb_003185_080 Hb_000537_080 Hb_000537_080 Hb_002486_040--Hb_000537_080 Hb_000656_400 Hb_000656_400 Hb_003126_080--Hb_000656_400 Hb_005993_040 Hb_005993_040 Hb_003126_080--Hb_005993_040 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_003126_080--Hb_004491_010 Hb_004223_280 Hb_004223_280 Hb_003126_080--Hb_004223_280 Hb_005357_030 Hb_005357_030 Hb_007590_050--Hb_005357_030 Hb_007590_050--Hb_002685_170 Hb_000109_160 Hb_000109_160 Hb_007590_050--Hb_000109_160 Hb_007590_050--Hb_000656_400 Hb_020956_020 Hb_020956_020 Hb_007590_050--Hb_020956_020 Hb_007590_050--Hb_003126_080 Hb_002685_170--Hb_004491_010 Hb_002685_170--Hb_005357_030 Hb_002685_170--Hb_004223_280 Hb_028995_040 Hb_028995_040 Hb_002685_170--Hb_028995_040 Hb_002685_170--Hb_003126_080 Hb_000853_420 Hb_000853_420 Hb_004491_010--Hb_000853_420 Hb_004491_010--Hb_028995_040 Hb_002603_120 Hb_002603_120 Hb_004491_010--Hb_002603_120 Hb_000041_270 Hb_000041_270 Hb_004491_010--Hb_000041_270 Hb_006198_110 Hb_006198_110 Hb_003185_080--Hb_006198_110 Hb_003185_080--Hb_000656_400 Hb_003749_010 Hb_003749_010 Hb_003185_080--Hb_003749_010 Hb_004117_010 Hb_004117_010 Hb_003185_080--Hb_004117_010 Hb_001235_190 Hb_001235_190 Hb_003185_080--Hb_001235_190 Hb_003185_080--Hb_028995_040 Hb_002477_140 Hb_002477_140 Hb_000537_080--Hb_002477_140 Hb_009265_090 Hb_009265_090 Hb_000537_080--Hb_009265_090 Hb_001504_020 Hb_001504_020 Hb_000537_080--Hb_001504_020 Hb_001534_050 Hb_001534_050 Hb_000537_080--Hb_001534_050 Hb_015279_010 Hb_015279_010 Hb_000537_080--Hb_015279_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.885 155.921 77.5611 47.6225 124.144 101.311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
214.704 251.735 105.928 110.467 52.0078

CAGE analysis