Hb_002486_080

Information

Type -
Description -
Location Contig2486: 72230-80406
Sequence    

Annotation

kegg
ID rcu:RCOM_0687300
description endo beta n-acetylglucosaminidase, putative
nr
ID XP_012086781.1
description PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
swissprot
ID Q9SRL4
description Cytosolic endo-beta-N-acetylglucosaminidase 2 OS=Arabidopsis thaliana GN=ENGASE2 PE=1 SV=1
trembl
ID B9S462
description Endo beta n-acetylglucosaminidase, putative OS=Ricinus communis GN=RCOM_0687300 PE=4 SV=1
Gene Ontology
ID GO:0016787
description cytosolic endo-beta-n-acetylglucosaminidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25877: 72251-79872 , PASA_asmbl_25878: 77756-78141 , PASA_asmbl_25879: 74207-74328 , PASA_asmbl_25880: 80046-80413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002486_080 0.0 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
2 Hb_001301_280 0.0686082227 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001951_060 0.0838307405 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
4 Hb_007416_070 0.0874286916 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
5 Hb_000465_150 0.0918299879 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
6 Hb_002281_020 0.0925976923 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
7 Hb_001571_060 0.0931418635 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
8 Hb_005015_110 0.0947598371 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
9 Hb_180378_010 0.100060766 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
10 Hb_000666_010 0.1008780388 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011671_120 0.1010267029 - - hypothetical protein JCGZ_26275 [Jatropha curcas]
12 Hb_007416_110 0.1026800432 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
13 Hb_000365_010 0.1051738146 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
14 Hb_000510_170 0.1061780704 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
15 Hb_005946_150 0.1075712609 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
16 Hb_002615_030 0.1086772623 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
17 Hb_000683_050 0.1094354974 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
18 Hb_000172_280 0.1095569185 - - aspartate aminotransferase, putative [Ricinus communis]
19 Hb_005016_010 0.1115108563 - - AMP dependent CoA ligase, putative [Ricinus communis]
20 Hb_000535_050 0.1134292567 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]

Gene co-expression network

sample Hb_002486_080 Hb_002486_080 Hb_001301_280 Hb_001301_280 Hb_002486_080--Hb_001301_280 Hb_001951_060 Hb_001951_060 Hb_002486_080--Hb_001951_060 Hb_007416_070 Hb_007416_070 Hb_002486_080--Hb_007416_070 Hb_000465_150 Hb_000465_150 Hb_002486_080--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_002486_080--Hb_002281_020 Hb_001571_060 Hb_001571_060 Hb_002486_080--Hb_001571_060 Hb_001301_280--Hb_001951_060 Hb_000365_010 Hb_000365_010 Hb_001301_280--Hb_000365_010 Hb_011671_120 Hb_011671_120 Hb_001301_280--Hb_011671_120 Hb_001301_280--Hb_007416_070 Hb_001619_060 Hb_001619_060 Hb_001301_280--Hb_001619_060 Hb_034083_020 Hb_034083_020 Hb_001951_060--Hb_034083_020 Hb_001951_060--Hb_007416_070 Hb_001951_060--Hb_000365_010 Hb_005016_010 Hb_005016_010 Hb_001951_060--Hb_005016_010 Hb_000703_330 Hb_000703_330 Hb_007416_070--Hb_000703_330 Hb_000683_050 Hb_000683_050 Hb_007416_070--Hb_000683_050 Hb_000009_060 Hb_000009_060 Hb_007416_070--Hb_000009_060 Hb_000197_190 Hb_000197_190 Hb_007416_070--Hb_000197_190 Hb_000367_180 Hb_000367_180 Hb_007416_070--Hb_000367_180 Hb_001811_170 Hb_001811_170 Hb_007416_070--Hb_001811_170 Hb_007416_110 Hb_007416_110 Hb_000465_150--Hb_007416_110 Hb_005015_110 Hb_005015_110 Hb_000465_150--Hb_005015_110 Hb_003025_030 Hb_003025_030 Hb_000465_150--Hb_003025_030 Hb_002232_430 Hb_002232_430 Hb_000465_150--Hb_002232_430 Hb_001493_150 Hb_001493_150 Hb_000465_150--Hb_001493_150 Hb_003440_020 Hb_003440_020 Hb_002281_020--Hb_003440_020 Hb_008375_010 Hb_008375_010 Hb_002281_020--Hb_008375_010 Hb_002281_020--Hb_007416_110 Hb_000585_110 Hb_000585_110 Hb_002281_020--Hb_000585_110 Hb_002281_020--Hb_001301_280 Hb_001571_060--Hb_005015_110 Hb_180378_010 Hb_180378_010 Hb_001571_060--Hb_180378_010 Hb_004218_180 Hb_004218_180 Hb_001571_060--Hb_004218_180 Hb_000666_010 Hb_000666_010 Hb_001571_060--Hb_000666_010 Hb_000535_050 Hb_000535_050 Hb_001571_060--Hb_000535_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.779796 2.79796 4.8315 5.9864 0.709962 1.14181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73236 2.75323 1.73599 5.60595 5.08414

CAGE analysis