Hb_002488_010

Information

Type -
Description -
Location Contig2488: 2203-2722
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08000g
description POPTRDRAFT_1087569; hypothetical protein
nr
ID XP_012079002.1
description PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
swissprot
ID P13284
description Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3
trembl
ID A0A067LLY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17387 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002488_010 0.0 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
2 Hb_000968_060 0.0754659984 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
3 Hb_000959_300 0.0794481204 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
4 Hb_000866_070 0.1013393316 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
5 Hb_012762_060 0.1023492861 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
6 Hb_003680_030 0.1035009819 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
7 Hb_002900_150 0.1071820549 - - PREDICTED: syntaxin-81 [Jatropha curcas]
8 Hb_004730_020 0.1093587085 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
9 Hb_006829_070 0.1101191567 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
10 Hb_001411_130 0.1122109637 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
11 Hb_002942_230 0.1125027183 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
12 Hb_000001_090 0.1153685165 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
13 Hb_003849_160 0.1181086091 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
14 Hb_012807_150 0.1184136266 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
15 Hb_004052_180 0.1205604755 - - PREDICTED: protein COBRA-like [Jatropha curcas]
16 Hb_000562_100 0.1214362997 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
17 Hb_005511_130 0.121530987 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
18 Hb_000032_410 0.1226708466 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
19 Hb_002217_080 0.1260339679 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
20 Hb_000977_290 0.1275806786 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002488_010 Hb_002488_010 Hb_000968_060 Hb_000968_060 Hb_002488_010--Hb_000968_060 Hb_000959_300 Hb_000959_300 Hb_002488_010--Hb_000959_300 Hb_000866_070 Hb_000866_070 Hb_002488_010--Hb_000866_070 Hb_012762_060 Hb_012762_060 Hb_002488_010--Hb_012762_060 Hb_003680_030 Hb_003680_030 Hb_002488_010--Hb_003680_030 Hb_002900_150 Hb_002900_150 Hb_002488_010--Hb_002900_150 Hb_000968_060--Hb_002900_150 Hb_000968_060--Hb_000866_070 Hb_000001_090 Hb_000001_090 Hb_000968_060--Hb_000001_090 Hb_003849_160 Hb_003849_160 Hb_000968_060--Hb_003849_160 Hb_000032_410 Hb_000032_410 Hb_000968_060--Hb_000032_410 Hb_001411_130 Hb_001411_130 Hb_000959_300--Hb_001411_130 Hb_001969_140 Hb_001969_140 Hb_000959_300--Hb_001969_140 Hb_002942_230 Hb_002942_230 Hb_000959_300--Hb_002942_230 Hb_003847_040 Hb_003847_040 Hb_000959_300--Hb_003847_040 Hb_000167_040 Hb_000167_040 Hb_000959_300--Hb_000167_040 Hb_000866_070--Hb_000001_090 Hb_000866_070--Hb_002942_230 Hb_029584_120 Hb_029584_120 Hb_000866_070--Hb_029584_120 Hb_000866_070--Hb_001411_130 Hb_002217_080 Hb_002217_080 Hb_000866_070--Hb_002217_080 Hb_012762_060--Hb_003680_030 Hb_002217_320 Hb_002217_320 Hb_012762_060--Hb_002217_320 Hb_006829_070 Hb_006829_070 Hb_012762_060--Hb_006829_070 Hb_002026_020 Hb_002026_020 Hb_012762_060--Hb_002026_020 Hb_000134_120 Hb_000134_120 Hb_012762_060--Hb_000134_120 Hb_003680_030--Hb_002217_320 Hb_012807_150 Hb_012807_150 Hb_003680_030--Hb_012807_150 Hb_003680_030--Hb_006829_070 Hb_003680_030--Hb_000959_300 Hb_002900_150--Hb_000866_070 Hb_005511_130 Hb_005511_130 Hb_002900_150--Hb_005511_130 Hb_004158_050 Hb_004158_050 Hb_002900_150--Hb_004158_050 Hb_005357_110 Hb_005357_110 Hb_002900_150--Hb_005357_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.7198 63.5593 169.943 205.836 42.5341 49.295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2307 8.68369 14.9569 39.9246 127.466

CAGE analysis