Hb_002490_030

Information

Type -
Description -
Location Contig2490: 30222-30836
Sequence    

Annotation

kegg
ID rcu:RCOM_1726900
description hypothetical protein
nr
ID XP_002516739.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RSM0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1726900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002490_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002272_200 0.1126435207 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
3 Hb_002900_100 0.1231980743 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
4 Hb_124951_020 0.1259566314 - - -
5 Hb_000816_190 0.1337783717 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001366_170 0.14037996 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
7 Hb_066514_010 0.1460096766 - - hypothetical protein RCOM_0204720 [Ricinus communis]
8 Hb_053709_040 0.1504638296 - - putative actin-97 protein [Linum usitatissimum]
9 Hb_011918_010 0.1544061348 - - hypothetical protein glysoja_041948 [Glycine soja]
10 Hb_000540_160 0.161699536 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
11 Hb_002900_180 0.1662326573 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
12 Hb_007575_090 0.1689130626 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
13 Hb_006907_050 0.1702127768 - - unnamed protein product [Coffea canephora]
14 Hb_007163_050 0.1713940712 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
15 Hb_030685_010 0.1733044814 - - -
16 Hb_118939_010 0.1755367693 - - protein binding protein, putative [Ricinus communis]
17 Hb_003207_150 0.1786836196 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
18 Hb_000260_110 0.1801054636 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
19 Hb_002749_040 0.1818826098 - - Ribosomal protein L6 family protein [Theobroma cacao]
20 Hb_186247_010 0.1827708738 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_002490_030 Hb_002490_030 Hb_002272_200 Hb_002272_200 Hb_002490_030--Hb_002272_200 Hb_002900_100 Hb_002900_100 Hb_002490_030--Hb_002900_100 Hb_124951_020 Hb_124951_020 Hb_002490_030--Hb_124951_020 Hb_000816_190 Hb_000816_190 Hb_002490_030--Hb_000816_190 Hb_001366_170 Hb_001366_170 Hb_002490_030--Hb_001366_170 Hb_066514_010 Hb_066514_010 Hb_002490_030--Hb_066514_010 Hb_002749_040 Hb_002749_040 Hb_002272_200--Hb_002749_040 Hb_007749_020 Hb_007749_020 Hb_002272_200--Hb_007749_020 Hb_000260_110 Hb_000260_110 Hb_002272_200--Hb_000260_110 Hb_002272_200--Hb_066514_010 Hb_000302_100 Hb_000302_100 Hb_002272_200--Hb_000302_100 Hb_002900_100--Hb_066514_010 Hb_002900_100--Hb_000816_190 Hb_002675_090 Hb_002675_090 Hb_002900_100--Hb_002675_090 Hb_011918_010 Hb_011918_010 Hb_002900_100--Hb_011918_010 Hb_006907_050 Hb_006907_050 Hb_002900_100--Hb_006907_050 Hb_000540_160 Hb_000540_160 Hb_124951_020--Hb_000540_160 Hb_002965_060 Hb_002965_060 Hb_124951_020--Hb_002965_060 Hb_003728_110 Hb_003728_110 Hb_124951_020--Hb_003728_110 Hb_007163_050 Hb_007163_050 Hb_124951_020--Hb_007163_050 Hb_030685_010 Hb_030685_010 Hb_124951_020--Hb_030685_010 Hb_000816_190--Hb_066514_010 Hb_008119_030 Hb_008119_030 Hb_000816_190--Hb_008119_030 Hb_000816_190--Hb_001366_170 Hb_000816_190--Hb_011918_010 Hb_053709_040 Hb_053709_040 Hb_001366_170--Hb_053709_040 Hb_001902_200 Hb_001902_200 Hb_001366_170--Hb_001902_200 Hb_003207_150 Hb_003207_150 Hb_001366_170--Hb_003207_150 Hb_006351_020 Hb_006351_020 Hb_001366_170--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001366_170--Hb_004032_210 Hb_066514_010--Hb_011918_010 Hb_007441_090 Hb_007441_090 Hb_066514_010--Hb_007441_090 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010 Hb_066514_010--Hb_000302_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.430932 1.86162 4.47772 13.2532 0.529308 0.822101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.389417 0.688642 0.671515 1.37869 0.891908

CAGE analysis