Hb_002490_040

Information

Type -
Description -
Location Contig2490: 36548-38080
Sequence    

Annotation

kegg
ID rcu:RCOM_0563220
description proteasome subunit beta type, putative (EC:3.4.25.1)
nr
ID ADR70868.1
description 20S proteasome beta subunit C2 [Hevea brasiliensis]
swissprot
ID O65084
description Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1
trembl
ID V5IV20
description Proteasome subunit beta type OS=Hevea brasiliensis GN=PBC2 PE=2 SV=1
Gene Ontology
ID GO:0000502
description proteasome subunit beta type-3-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002490_040 0.0 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
2 Hb_004429_040 0.0619461856 - - -
3 Hb_000563_290 0.0749497318 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
4 Hb_001241_060 0.0886092802 - - -
5 Hb_000195_050 0.0997471216 - - -
6 Hb_038675_010 0.1329895935 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
7 Hb_059069_010 0.1339865139 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
8 Hb_011360_100 0.1490241292 - - -
9 Hb_010024_010 0.1504029096 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_022593_060 0.16107657 - - -
11 Hb_004458_050 0.1618187267 - - -
12 Hb_005741_010 0.1661916514 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
13 Hb_004317_050 0.1749135052 - - -
14 Hb_012194_010 0.1778635945 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
15 Hb_001206_070 0.1953810708 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_006275_030 0.1985975547 - - -
17 Hb_000574_020 0.201475502 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001385_050 0.2076488837 - - catalytic, putative [Ricinus communis]
19 Hb_002463_080 0.2087763406 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_057746_010 0.2095840924 - - -

Gene co-expression network

sample Hb_002490_040 Hb_002490_040 Hb_004429_040 Hb_004429_040 Hb_002490_040--Hb_004429_040 Hb_000563_290 Hb_000563_290 Hb_002490_040--Hb_000563_290 Hb_001241_060 Hb_001241_060 Hb_002490_040--Hb_001241_060 Hb_000195_050 Hb_000195_050 Hb_002490_040--Hb_000195_050 Hb_038675_010 Hb_038675_010 Hb_002490_040--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_002490_040--Hb_059069_010 Hb_004429_040--Hb_001241_060 Hb_004429_040--Hb_000563_290 Hb_004429_040--Hb_000195_050 Hb_010024_010 Hb_010024_010 Hb_004429_040--Hb_010024_010 Hb_022593_060 Hb_022593_060 Hb_004429_040--Hb_022593_060 Hb_000563_290--Hb_000195_050 Hb_000563_290--Hb_038675_010 Hb_000563_290--Hb_059069_010 Hb_011360_100 Hb_011360_100 Hb_000563_290--Hb_011360_100 Hb_001241_060--Hb_010024_010 Hb_001241_060--Hb_022593_060 Hb_001241_060--Hb_000563_290 Hb_001206_070 Hb_001206_070 Hb_001241_060--Hb_001206_070 Hb_000195_050--Hb_038675_010 Hb_000195_050--Hb_059069_010 Hb_000195_050--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000195_050--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000195_050--Hb_005741_010 Hb_038675_010--Hb_059069_010 Hb_038675_010--Hb_011360_100 Hb_038675_010--Hb_004458_050 Hb_038675_010--Hb_005741_010 Hb_012194_010 Hb_012194_010 Hb_038675_010--Hb_012194_010 Hb_059069_010--Hb_011360_100 Hb_059069_010--Hb_004458_050 Hb_059069_010--Hb_005741_010 Hb_059069_010--Hb_012194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.1523 0.305132 0 0.239483 0.114986 146.069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.321738 0.283441 0

CAGE analysis