Hb_002490_050

Information

Type -
Description -
Location Contig2490: 38085-39841
Sequence    

Annotation

kegg
ID osa:4328517
description Os02g0182500
nr
ID NP_001046098.1
description Os02g0182500, partial [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID K7KPP4
description Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002490_050 0.0 - - Os02g0182500, partial [Oryza sativa Japonica Group]
2 Hb_176022_010 0.1550542529 - - -
3 Hb_038675_010 0.2709139654 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
4 Hb_059069_010 0.2709713591 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
5 Hb_000195_050 0.2715867579 - - -
6 Hb_011360_100 0.2723310434 - - -
7 Hb_009265_020 0.2739034879 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_004458_050 0.274187459 - - -
9 Hb_005741_010 0.2749632161 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
10 Hb_000563_290 0.2764068642 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
11 Hb_012194_010 0.2773738555 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
12 Hb_002490_040 0.2779526145 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
13 Hb_002307_070 0.2783362166 - - hypothetical protein JCGZ_14841 [Jatropha curcas]
14 Hb_000831_040 0.2785396895 - - -
15 Hb_006275_030 0.2828227266 - - -
16 Hb_000574_020 0.283691981 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002463_080 0.2860158388 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_003556_020 0.2870374339 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
19 Hb_003209_160 0.2913073321 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
20 Hb_004317_050 0.2930521835 - - -

Gene co-expression network

sample Hb_002490_050 Hb_002490_050 Hb_176022_010 Hb_176022_010 Hb_002490_050--Hb_176022_010 Hb_038675_010 Hb_038675_010 Hb_002490_050--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_002490_050--Hb_059069_010 Hb_000195_050 Hb_000195_050 Hb_002490_050--Hb_000195_050 Hb_011360_100 Hb_011360_100 Hb_002490_050--Hb_011360_100 Hb_009265_020 Hb_009265_020 Hb_002490_050--Hb_009265_020 Hb_176022_010--Hb_011360_100 Hb_176022_010--Hb_059069_010 Hb_176022_010--Hb_038675_010 Hb_004458_050 Hb_004458_050 Hb_176022_010--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_176022_010--Hb_005741_010 Hb_038675_010--Hb_059069_010 Hb_038675_010--Hb_011360_100 Hb_038675_010--Hb_004458_050 Hb_038675_010--Hb_005741_010 Hb_038675_010--Hb_000195_050 Hb_012194_010 Hb_012194_010 Hb_038675_010--Hb_012194_010 Hb_059069_010--Hb_011360_100 Hb_059069_010--Hb_004458_050 Hb_059069_010--Hb_005741_010 Hb_059069_010--Hb_000195_050 Hb_059069_010--Hb_012194_010 Hb_000563_290 Hb_000563_290 Hb_000195_050--Hb_000563_290 Hb_000195_050--Hb_011360_100 Hb_000195_050--Hb_004458_050 Hb_000195_050--Hb_005741_010 Hb_011360_100--Hb_004458_050 Hb_011360_100--Hb_005741_010 Hb_011360_100--Hb_012194_010 Hb_006275_030 Hb_006275_030 Hb_011360_100--Hb_006275_030 Hb_000115_270 Hb_000115_270 Hb_009265_020--Hb_000115_270 Hb_098842_010 Hb_098842_010 Hb_009265_020--Hb_098842_010 Hb_002490_040 Hb_002490_040 Hb_009265_020--Hb_002490_040 Hb_009265_020--Hb_176022_010 Hb_056531_040 Hb_056531_040 Hb_009265_020--Hb_056531_040 Hb_000059_090 Hb_000059_090 Hb_009265_020--Hb_000059_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25015 0.055671 0 0 0 5.11302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.119098 0.794281 0 0.218829

CAGE analysis