Hb_002490_090

Information

Type -
Description -
Location Contig2490: 62288-63031
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09790g
description POPTRDRAFT_800529; hypothetical protein
nr
ID XP_011035078.1
description PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H306
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s09790g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002490_090 0.0 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
2 Hb_172633_020 0.0558395465 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
3 Hb_006120_030 0.0733140152 - - -
4 Hb_184942_010 0.0994510525 - - STS14 protein precursor, putative [Ricinus communis]
5 Hb_000917_120 0.1072364764 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007123_020 0.1141540933 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
7 Hb_150084_010 0.1158120575 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
8 Hb_000011_120 0.1187902987 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
9 Hb_000963_010 0.1224274321 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
10 Hb_002042_160 0.1237544114 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
11 Hb_001514_070 0.1254209146 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001329_110 0.1285078221 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
13 Hb_002870_010 0.1300906906 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
14 Hb_000844_100 0.1307919495 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
15 Hb_007943_020 0.1333120217 - - transcription factor, putative [Ricinus communis]
16 Hb_029260_010 0.133375293 - - nitrate transporter, putative [Ricinus communis]
17 Hb_138606_020 0.1335196038 - - Nitrate transporter2.5 [Theobroma cacao]
18 Hb_055529_010 0.1352245428 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
19 Hb_000934_290 0.1354020792 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001158_080 0.1357348011 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]

Gene co-expression network

sample Hb_002490_090 Hb_002490_090 Hb_172633_020 Hb_172633_020 Hb_002490_090--Hb_172633_020 Hb_006120_030 Hb_006120_030 Hb_002490_090--Hb_006120_030 Hb_184942_010 Hb_184942_010 Hb_002490_090--Hb_184942_010 Hb_000917_120 Hb_000917_120 Hb_002490_090--Hb_000917_120 Hb_007123_020 Hb_007123_020 Hb_002490_090--Hb_007123_020 Hb_150084_010 Hb_150084_010 Hb_002490_090--Hb_150084_010 Hb_172633_020--Hb_184942_010 Hb_002042_160 Hb_002042_160 Hb_172633_020--Hb_002042_160 Hb_172633_020--Hb_150084_010 Hb_172633_020--Hb_006120_030 Hb_000963_010 Hb_000963_010 Hb_172633_020--Hb_000963_010 Hb_006120_030--Hb_000917_120 Hb_054865_030 Hb_054865_030 Hb_006120_030--Hb_054865_030 Hb_000011_120 Hb_000011_120 Hb_006120_030--Hb_000011_120 Hb_009659_040 Hb_009659_040 Hb_006120_030--Hb_009659_040 Hb_184942_010--Hb_000963_010 Hb_184942_010--Hb_150084_010 Hb_001158_080 Hb_001158_080 Hb_184942_010--Hb_001158_080 Hb_184942_010--Hb_002042_160 Hb_000917_120--Hb_009659_040 Hb_029576_080 Hb_029576_080 Hb_000917_120--Hb_029576_080 Hb_000597_080 Hb_000597_080 Hb_000917_120--Hb_000597_080 Hb_000917_120--Hb_000011_120 Hb_001660_050 Hb_001660_050 Hb_000917_120--Hb_001660_050 Hb_001329_110 Hb_001329_110 Hb_007123_020--Hb_001329_110 Hb_175758_010 Hb_175758_010 Hb_007123_020--Hb_175758_010 Hb_007123_020--Hb_000011_120 Hb_001421_010 Hb_001421_010 Hb_007123_020--Hb_001421_010 Hb_006711_020 Hb_006711_020 Hb_007123_020--Hb_006711_020 Hb_002333_010 Hb_002333_010 Hb_150084_010--Hb_002333_010 Hb_150084_010--Hb_000963_010 Hb_000172_740 Hb_000172_740 Hb_150084_010--Hb_000172_740 Hb_150084_010--Hb_002042_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.55614 0.325474 1.71601 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.58453 1.28168

CAGE analysis