Hb_002493_010

Information

Type -
Description -
Location Contig2493: 4586-5807
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25910: 4892-11148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002493_010 0.0 - - -
2 Hb_033623_040 0.1518914899 - - JHL22C18.10 [Jatropha curcas]
3 Hb_132384_010 0.2681988929 - - hypothetical protein VITISV_018559 [Vitis vinifera]
4 Hb_002122_020 0.2788605993 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
5 Hb_001300_250 0.2791467774 - - hypothetical protein JCGZ_22020 [Jatropha curcas]
6 Hb_138585_020 0.3054135111 - - conserved hypothetical protein [Ricinus communis]
7 Hb_088410_010 0.3194022507 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_087203_010 0.3232265466 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 68-like [Pyrus x bretschneideri]
9 Hb_000834_070 0.3360088808 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
10 Hb_000710_090 0.3378201134 - - PREDICTED: uncharacterized protein LOC104583249 [Brachypodium distachyon]
11 Hb_001728_120 0.3440084184 - - hypothetical protein POPTR_0001s15540g, partial [Populus trichocarpa]
12 Hb_011242_020 0.3455520923 - - multidrug resistance pump, putative [Ricinus communis]
13 Hb_001587_170 0.3491875504 - - hypothetical protein B456_010G223200, partial [Gossypium raimondii]
14 Hb_001550_050 0.3540444126 - - PREDICTED: J domain-containing protein spf31 [Eucalyptus grandis]
15 Hb_001369_430 0.3548330485 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
16 Hb_028998_010 0.3548446484 - - -
17 Hb_000110_110 0.3548691203 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
18 Hb_089844_010 0.3548756334 - - -
19 Hb_026405_010 0.3548804712 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
20 Hb_009577_010 0.3548815416 - - -

Gene co-expression network

sample Hb_002493_010 Hb_002493_010 Hb_033623_040 Hb_033623_040 Hb_002493_010--Hb_033623_040 Hb_132384_010 Hb_132384_010 Hb_002493_010--Hb_132384_010 Hb_002122_020 Hb_002122_020 Hb_002493_010--Hb_002122_020 Hb_001300_250 Hb_001300_250 Hb_002493_010--Hb_001300_250 Hb_138585_020 Hb_138585_020 Hb_002493_010--Hb_138585_020 Hb_088410_010 Hb_088410_010 Hb_002493_010--Hb_088410_010 Hb_033623_040--Hb_002122_020 Hb_017184_010 Hb_017184_010 Hb_033623_040--Hb_017184_010 Hb_001952_080 Hb_001952_080 Hb_033623_040--Hb_001952_080 Hb_004989_010 Hb_004989_010 Hb_033623_040--Hb_004989_010 Hb_039316_010 Hb_039316_010 Hb_033623_040--Hb_039316_010 Hb_087203_010 Hb_087203_010 Hb_132384_010--Hb_087203_010 Hb_132384_010--Hb_033623_040 Hb_004195_220 Hb_004195_220 Hb_132384_010--Hb_004195_220 Hb_151320_010 Hb_151320_010 Hb_132384_010--Hb_151320_010 Hb_011242_020 Hb_011242_020 Hb_132384_010--Hb_011242_020 Hb_002122_020--Hb_088410_010 Hb_002473_140 Hb_002473_140 Hb_002122_020--Hb_002473_140 Hb_006157_050 Hb_006157_050 Hb_002122_020--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_002122_020--Hb_065943_010 Hb_011478_010 Hb_011478_010 Hb_002122_020--Hb_011478_010 Hb_001728_120 Hb_001728_120 Hb_001300_250--Hb_001728_120 Hb_003073_090 Hb_003073_090 Hb_001300_250--Hb_003073_090 Hb_000834_070 Hb_000834_070 Hb_001300_250--Hb_000834_070 Hb_002073_110 Hb_002073_110 Hb_001300_250--Hb_002073_110 Hb_003197_010 Hb_003197_010 Hb_001300_250--Hb_003197_010 Hb_003164_010 Hb_003164_010 Hb_001300_250--Hb_003164_010 Hb_076795_010 Hb_076795_010 Hb_138585_020--Hb_076795_010 Hb_138585_020--Hb_088410_010 Hb_003436_030 Hb_003436_030 Hb_138585_020--Hb_003436_030 Hb_172388_010 Hb_172388_010 Hb_138585_020--Hb_172388_010 Hb_138585_020--Hb_002122_020 Hb_088410_010--Hb_002473_140 Hb_159938_010 Hb_159938_010 Hb_088410_010--Hb_159938_010 Hb_002869_070 Hb_002869_070 Hb_088410_010--Hb_002869_070 Hb_050334_010 Hb_050334_010 Hb_088410_010--Hb_050334_010 Hb_142570_010 Hb_142570_010 Hb_088410_010--Hb_142570_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.500558 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.813893 0 0.861083

CAGE analysis