Hb_002493_030

Information

Type -
Description -
Location Contig2493: 15080-16418
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002493_030 0.0 - - -
2 Hb_001691_050 0.173565801 - - -
3 Hb_171108_010 0.2048821545 - - -
4 Hb_007634_020 0.2064566493 - - -
5 Hb_000905_070 0.2097807468 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
6 Hb_004007_150 0.2108671386 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
7 Hb_002232_290 0.2119614242 - - -
8 Hb_043655_010 0.217208541 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
9 Hb_141838_010 0.2172564846 - - -
10 Hb_031073_010 0.2185844027 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
11 Hb_073212_010 0.2299829007 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
12 Hb_003534_040 0.2307118438 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
13 Hb_031862_170 0.2351888216 - - immunophilin, putative [Ricinus communis]
14 Hb_000156_030 0.2391146305 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000161_100 0.2395873361 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
16 Hb_000590_080 0.2434707457 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
17 Hb_011515_030 0.2456122367 - - -
18 Hb_002234_220 0.2477161019 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
19 Hb_000525_040 0.2492999015 - - -
20 Hb_008147_030 0.2502412618 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]

Gene co-expression network

sample Hb_002493_030 Hb_002493_030 Hb_001691_050 Hb_001691_050 Hb_002493_030--Hb_001691_050 Hb_171108_010 Hb_171108_010 Hb_002493_030--Hb_171108_010 Hb_007634_020 Hb_007634_020 Hb_002493_030--Hb_007634_020 Hb_000905_070 Hb_000905_070 Hb_002493_030--Hb_000905_070 Hb_004007_150 Hb_004007_150 Hb_002493_030--Hb_004007_150 Hb_002232_290 Hb_002232_290 Hb_002493_030--Hb_002232_290 Hb_073212_010 Hb_073212_010 Hb_001691_050--Hb_073212_010 Hb_088542_010 Hb_088542_010 Hb_001691_050--Hb_088542_010 Hb_043655_010 Hb_043655_010 Hb_001691_050--Hb_043655_010 Hb_001691_050--Hb_007634_020 Hb_001691_050--Hb_002232_290 Hb_171108_010--Hb_000905_070 Hb_171108_010--Hb_004007_150 Hb_171108_010--Hb_043655_010 Hb_003534_040 Hb_003534_040 Hb_171108_010--Hb_003534_040 Hb_000922_310 Hb_000922_310 Hb_171108_010--Hb_000922_310 Hb_002026_230 Hb_002026_230 Hb_007634_020--Hb_002026_230 Hb_000525_040 Hb_000525_040 Hb_007634_020--Hb_000525_040 Hb_000156_030 Hb_000156_030 Hb_007634_020--Hb_000156_030 Hb_005568_070 Hb_005568_070 Hb_007634_020--Hb_005568_070 Hb_156144_020 Hb_156144_020 Hb_007634_020--Hb_156144_020 Hb_001892_160 Hb_001892_160 Hb_007634_020--Hb_001892_160 Hb_005892_070 Hb_005892_070 Hb_000905_070--Hb_005892_070 Hb_000100_050 Hb_000100_050 Hb_000905_070--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_000905_070--Hb_011978_010 Hb_000375_380 Hb_000375_380 Hb_000905_070--Hb_000375_380 Hb_004007_150--Hb_003534_040 Hb_004007_150--Hb_073212_010 Hb_000101_210 Hb_000101_210 Hb_004007_150--Hb_000101_210 Hb_001677_050 Hb_001677_050 Hb_004007_150--Hb_001677_050 Hb_031073_010 Hb_031073_010 Hb_004007_150--Hb_031073_010 Hb_004007_150--Hb_088542_010 Hb_138600_010 Hb_138600_010 Hb_002232_290--Hb_138600_010 Hb_031862_170 Hb_031862_170 Hb_002232_290--Hb_031862_170 Hb_002232_290--Hb_005568_070 Hb_008147_030 Hb_008147_030 Hb_002232_290--Hb_008147_030 Hb_029510_010 Hb_029510_010 Hb_002232_290--Hb_029510_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1187 0.541884 0.232476 0.336452 14.4614 2.55097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.678973 0 1.11418 1.00463 0.610619

CAGE analysis