Hb_002493_090

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2493: 133221-138761
Sequence    

Annotation

kegg
ID rcu:RCOM_0363740
description hypothetical protein
nr
ID XP_012081857.1
description PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
swissprot
ID Q9FG77
description Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1
trembl
ID M9TIF0
description Uncharacterized protein OS=Jatropha curcas GN=WRKY11 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25912: 133221-138603 , PASA_asmbl_25913: 133417-138461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002493_090 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
2 Hb_003018_160 0.0686227779 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
3 Hb_004143_070 0.0839860497 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001975_020 0.0844172492 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
5 Hb_000335_010 0.0849034754 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_031754_010 0.0860272732 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
7 Hb_000849_100 0.0873712602 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
8 Hb_000165_130 0.0883297991 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
9 Hb_000300_580 0.0906815609 - - PREDICTED: importin-5-like [Jatropha curcas]
10 Hb_011497_010 0.0907759181 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
11 Hb_000134_360 0.0909309159 - - PREDICTED: protein gar2 [Jatropha curcas]
12 Hb_001863_110 0.0929580419 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_046615_020 0.098080292 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
14 Hb_001301_210 0.0981231532 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
15 Hb_001575_080 0.0981640274 - - PREDICTED: villin-4-like [Jatropha curcas]
16 Hb_022250_110 0.0982635522 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
17 Hb_000250_070 0.0986994036 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
18 Hb_006002_030 0.0989450707 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
19 Hb_005295_040 0.0990579486 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
20 Hb_000631_150 0.1004631304 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]

Gene co-expression network

sample Hb_002493_090 Hb_002493_090 Hb_003018_160 Hb_003018_160 Hb_002493_090--Hb_003018_160 Hb_004143_070 Hb_004143_070 Hb_002493_090--Hb_004143_070 Hb_001975_020 Hb_001975_020 Hb_002493_090--Hb_001975_020 Hb_000335_010 Hb_000335_010 Hb_002493_090--Hb_000335_010 Hb_031754_010 Hb_031754_010 Hb_002493_090--Hb_031754_010 Hb_000849_100 Hb_000849_100 Hb_002493_090--Hb_000849_100 Hb_011497_010 Hb_011497_010 Hb_003018_160--Hb_011497_010 Hb_001575_080 Hb_001575_080 Hb_003018_160--Hb_001575_080 Hb_006816_300 Hb_006816_300 Hb_003018_160--Hb_006816_300 Hb_000116_280 Hb_000116_280 Hb_003018_160--Hb_000116_280 Hb_003018_160--Hb_001975_020 Hb_046615_020 Hb_046615_020 Hb_004143_070--Hb_046615_020 Hb_000181_310 Hb_000181_310 Hb_004143_070--Hb_000181_310 Hb_002159_040 Hb_002159_040 Hb_004143_070--Hb_002159_040 Hb_000244_240 Hb_000244_240 Hb_004143_070--Hb_000244_240 Hb_033594_020 Hb_033594_020 Hb_004143_070--Hb_033594_020 Hb_000327_310 Hb_000327_310 Hb_001975_020--Hb_000327_310 Hb_001975_020--Hb_046615_020 Hb_001975_020--Hb_031754_010 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040 Hb_001975_020--Hb_000116_280 Hb_000335_010--Hb_031754_010 Hb_000457_060 Hb_000457_060 Hb_000335_010--Hb_000457_060 Hb_000789_080 Hb_000789_080 Hb_000335_010--Hb_000789_080 Hb_001437_100 Hb_001437_100 Hb_000335_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_000335_010--Hb_002043_170 Hb_002883_010 Hb_002883_010 Hb_000335_010--Hb_002883_010 Hb_000035_040 Hb_000035_040 Hb_031754_010--Hb_000035_040 Hb_031754_010--Hb_002883_010 Hb_031754_010--Hb_046615_020 Hb_000424_010 Hb_000424_010 Hb_031754_010--Hb_000424_010 Hb_000631_150 Hb_000631_150 Hb_000849_100--Hb_000631_150 Hb_000134_360 Hb_000134_360 Hb_000849_100--Hb_000134_360 Hb_006002_030 Hb_006002_030 Hb_000849_100--Hb_006002_030 Hb_003716_020 Hb_003716_020 Hb_000849_100--Hb_003716_020 Hb_002725_070 Hb_002725_070 Hb_000849_100--Hb_002725_070 Hb_002235_320 Hb_002235_320 Hb_000849_100--Hb_002235_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.8 17.3423 4.64527 14.9262 46.2087 46.464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1567 8.43428 13.9614 11.3346 10.7879

CAGE analysis