Hb_002493_100

Information

Type -
Description -
Location Contig2493: 168991-172668
Sequence    

Annotation

kegg
ID pop:POPTR_0011s17240g
description hypothetical protein
nr
ID XP_012081858.1
description PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
swissprot
ID Q9ZWC8
description Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1
trembl
ID A0A067KCE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19227 PE=4 SV=1
Gene Ontology
ID GO:0016021
description receptor-like protein kinase bri1-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25916: 170019-170195 , PASA_asmbl_25918: 172096-172236 , PASA_asmbl_25919: 172626-173275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002493_100 0.0 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
2 Hb_004225_020 0.0936867756 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_002026_100 0.0983070999 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
4 Hb_002039_010 0.1015474317 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_002027_120 0.1100784923 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
6 Hb_001001_060 0.1111025773 - - -
7 Hb_001516_100 0.113482985 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000490_030 0.1151248251 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
9 Hb_004452_100 0.1153814768 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
10 Hb_000915_050 0.1155546369 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000209_020 0.1161786086 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
12 Hb_000184_130 0.116997119 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
13 Hb_029281_010 0.1172647313 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
14 Hb_000808_180 0.1186192543 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
15 Hb_001274_020 0.1211067834 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
16 Hb_002759_280 0.1215297623 - - PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]
17 Hb_007943_080 0.1219236773 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
18 Hb_004055_040 0.1220825667 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
19 Hb_000836_360 0.122538616 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
20 Hb_006400_040 0.1226291141 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]

Gene co-expression network

sample Hb_002493_100 Hb_002493_100 Hb_004225_020 Hb_004225_020 Hb_002493_100--Hb_004225_020 Hb_002026_100 Hb_002026_100 Hb_002493_100--Hb_002026_100 Hb_002039_010 Hb_002039_010 Hb_002493_100--Hb_002039_010 Hb_002027_120 Hb_002027_120 Hb_002493_100--Hb_002027_120 Hb_001001_060 Hb_001001_060 Hb_002493_100--Hb_001001_060 Hb_001516_100 Hb_001516_100 Hb_002493_100--Hb_001516_100 Hb_004225_020--Hb_001001_060 Hb_000915_050 Hb_000915_050 Hb_004225_020--Hb_000915_050 Hb_002131_020 Hb_002131_020 Hb_004225_020--Hb_002131_020 Hb_004204_020 Hb_004204_020 Hb_004225_020--Hb_004204_020 Hb_001663_030 Hb_001663_030 Hb_004225_020--Hb_001663_030 Hb_004225_020--Hb_001516_100 Hb_012634_010 Hb_012634_010 Hb_002026_100--Hb_012634_010 Hb_000152_820 Hb_000152_820 Hb_002026_100--Hb_000152_820 Hb_000977_070 Hb_000977_070 Hb_002026_100--Hb_000977_070 Hb_010175_020 Hb_010175_020 Hb_002026_100--Hb_010175_020 Hb_001736_040 Hb_001736_040 Hb_002026_100--Hb_001736_040 Hb_000406_220 Hb_000406_220 Hb_002026_100--Hb_000406_220 Hb_002890_340 Hb_002890_340 Hb_002039_010--Hb_002890_340 Hb_002039_010--Hb_004204_020 Hb_004452_100 Hb_004452_100 Hb_002039_010--Hb_004452_100 Hb_002039_010--Hb_000152_820 Hb_000184_130 Hb_000184_130 Hb_002039_010--Hb_000184_130 Hb_015306_020 Hb_015306_020 Hb_002039_010--Hb_015306_020 Hb_002759_280 Hb_002759_280 Hb_002027_120--Hb_002759_280 Hb_002027_120--Hb_015306_020 Hb_002027_120--Hb_001001_060 Hb_011918_080 Hb_011918_080 Hb_002027_120--Hb_011918_080 Hb_007943_080 Hb_007943_080 Hb_002027_120--Hb_007943_080 Hb_009838_100 Hb_009838_100 Hb_002027_120--Hb_009838_100 Hb_000009_170 Hb_000009_170 Hb_001001_060--Hb_000009_170 Hb_000120_800 Hb_000120_800 Hb_001001_060--Hb_000120_800 Hb_001001_060--Hb_004204_020 Hb_000190_140 Hb_000190_140 Hb_001001_060--Hb_000190_140 Hb_004734_060 Hb_004734_060 Hb_001516_100--Hb_004734_060 Hb_000953_010 Hb_000953_010 Hb_001516_100--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_001516_100--Hb_000836_360 Hb_000808_180 Hb_000808_180 Hb_001516_100--Hb_000808_180 Hb_001516_100--Hb_000977_070 Hb_033152_080 Hb_033152_080 Hb_001516_100--Hb_033152_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6061 7.3384 0.627772 4.26815 13.8109 15.5329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.82645 7.18431 12.7438 9.22816 2.93419

CAGE analysis