Hb_002495_060

Information

Type -
Description -
Location Contig2495: 71735-75082
Sequence    

Annotation

kegg
ID rcu:RCOM_0920820
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002515418.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SZ52
description Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
trembl
ID B9RNU9
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0920820 PE=4 SV=1
Gene Ontology
ID GO:0005623
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25931: 71592-71872 , PASA_asmbl_25932: 71957-73653 , PASA_asmbl_25933: 73980-74495 , PASA_asmbl_25934: 74503-76542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002495_060 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000479_170 0.1129876663 - - chaperone clpb, putative [Ricinus communis]
3 Hb_002276_070 0.1137666062 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
4 Hb_001437_120 0.1163791946 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
5 Hb_010488_010 0.1179718747 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
6 Hb_028707_110 0.1215040516 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
7 Hb_002368_070 0.1233068808 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
8 Hb_010757_030 0.1250129292 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_011931_060 0.1339618131 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
10 Hb_005250_030 0.1341253482 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
11 Hb_001408_030 0.1344645733 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
12 Hb_003900_030 0.1346266695 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
13 Hb_004785_070 0.1371366733 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
14 Hb_006052_030 0.1407721492 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
15 Hb_008092_060 0.140801847 - - -
16 Hb_007545_130 0.1417344608 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
17 Hb_002942_130 0.1434071881 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
18 Hb_003878_080 0.1480026159 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
19 Hb_007192_090 0.1481058232 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
20 Hb_002328_040 0.1508578555 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002495_060 Hb_002495_060 Hb_000479_170 Hb_000479_170 Hb_002495_060--Hb_000479_170 Hb_002276_070 Hb_002276_070 Hb_002495_060--Hb_002276_070 Hb_001437_120 Hb_001437_120 Hb_002495_060--Hb_001437_120 Hb_010488_010 Hb_010488_010 Hb_002495_060--Hb_010488_010 Hb_028707_110 Hb_028707_110 Hb_002495_060--Hb_028707_110 Hb_002368_070 Hb_002368_070 Hb_002495_060--Hb_002368_070 Hb_007769_040 Hb_007769_040 Hb_000479_170--Hb_007769_040 Hb_011931_060 Hb_011931_060 Hb_000479_170--Hb_011931_060 Hb_005250_010 Hb_005250_010 Hb_000479_170--Hb_005250_010 Hb_025477_050 Hb_025477_050 Hb_000479_170--Hb_025477_050 Hb_005211_020 Hb_005211_020 Hb_000479_170--Hb_005211_020 Hb_007545_130 Hb_007545_130 Hb_000479_170--Hb_007545_130 Hb_002276_070--Hb_001437_120 Hb_002276_070--Hb_002368_070 Hb_002276_070--Hb_028707_110 Hb_004785_070 Hb_004785_070 Hb_002276_070--Hb_004785_070 Hb_002276_070--Hb_010488_010 Hb_001437_120--Hb_028707_110 Hb_001408_030 Hb_001408_030 Hb_001437_120--Hb_001408_030 Hb_008092_060 Hb_008092_060 Hb_001437_120--Hb_008092_060 Hb_000997_140 Hb_000997_140 Hb_001437_120--Hb_000997_140 Hb_003929_220 Hb_003929_220 Hb_001437_120--Hb_003929_220 Hb_010488_010--Hb_001437_120 Hb_010488_010--Hb_028707_110 Hb_010488_010--Hb_001408_030 Hb_008092_050 Hb_008092_050 Hb_010488_010--Hb_008092_050 Hb_028707_110--Hb_000997_140 Hb_000069_490 Hb_000069_490 Hb_028707_110--Hb_000069_490 Hb_010757_030 Hb_010757_030 Hb_028707_110--Hb_010757_030 Hb_003077_130 Hb_003077_130 Hb_028707_110--Hb_003077_130 Hb_028707_110--Hb_003929_220 Hb_006618_050 Hb_006618_050 Hb_002368_070--Hb_006618_050 Hb_002368_070--Hb_011931_060 Hb_005250_030 Hb_005250_030 Hb_002368_070--Hb_005250_030 Hb_002636_110 Hb_002636_110 Hb_002368_070--Hb_002636_110 Hb_001623_280 Hb_001623_280 Hb_002368_070--Hb_001623_280 Hb_031658_040 Hb_031658_040 Hb_002368_070--Hb_031658_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39087 6.05021 5.37434 4.24779 8.7371 6.27431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29134 1.03653 3.75828 3.20638 22.3746

CAGE analysis