Hb_002495_090

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2495: 99129-104232
Sequence    

Annotation

kegg
ID tcc:TCM_024828
description Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
nr
ID XP_012073030.1
description PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
swissprot
ID Q3EAI1
description Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2 SV=1
trembl
ID A0A067KM93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06815 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh48-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25941: 99182-103763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002495_090 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
2 Hb_137216_010 0.0776707584 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
3 Hb_000768_120 0.0837018469 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
4 Hb_000134_040 0.0890872631 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
5 Hb_007479_010 0.0902909292 - - Root phototropism protein, putative [Ricinus communis]
6 Hb_006681_020 0.0928557163 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
7 Hb_005488_190 0.0959240281 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
8 Hb_007803_040 0.1041011849 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
9 Hb_000009_510 0.1095977423 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
10 Hb_003680_060 0.110809014 - - hypothetical protein VITISV_022322 [Vitis vinifera]
11 Hb_000544_070 0.1126245014 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
12 Hb_000116_220 0.113397356 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000544_080 0.113398553 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
14 Hb_058620_080 0.1138707563 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
15 Hb_000327_260 0.1143395898 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009393_130 0.1155086071 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
17 Hb_004855_070 0.1157313421 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
18 Hb_006583_030 0.1165488751 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
19 Hb_009838_070 0.1165798679 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
20 Hb_000302_230 0.1182845796 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002495_090 Hb_002495_090 Hb_137216_010 Hb_137216_010 Hb_002495_090--Hb_137216_010 Hb_000768_120 Hb_000768_120 Hb_002495_090--Hb_000768_120 Hb_000134_040 Hb_000134_040 Hb_002495_090--Hb_000134_040 Hb_007479_010 Hb_007479_010 Hb_002495_090--Hb_007479_010 Hb_006681_020 Hb_006681_020 Hb_002495_090--Hb_006681_020 Hb_005488_190 Hb_005488_190 Hb_002495_090--Hb_005488_190 Hb_000393_040 Hb_000393_040 Hb_137216_010--Hb_000393_040 Hb_000174_080 Hb_000174_080 Hb_137216_010--Hb_000174_080 Hb_137216_010--Hb_000768_120 Hb_000009_510 Hb_000009_510 Hb_137216_010--Hb_000009_510 Hb_000302_230 Hb_000302_230 Hb_137216_010--Hb_000302_230 Hb_000768_120--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_000768_120--Hb_004855_070 Hb_000768_120--Hb_007479_010 Hb_004208_090 Hb_004208_090 Hb_000768_120--Hb_004208_090 Hb_001999_260 Hb_001999_260 Hb_000768_120--Hb_001999_260 Hb_000134_040--Hb_004855_070 Hb_009838_070 Hb_009838_070 Hb_000134_040--Hb_009838_070 Hb_000134_040--Hb_007479_010 Hb_003680_060 Hb_003680_060 Hb_000134_040--Hb_003680_060 Hb_000327_260 Hb_000327_260 Hb_000134_040--Hb_000327_260 Hb_007479_010--Hb_004855_070 Hb_007479_010--Hb_006681_020 Hb_000932_110 Hb_000932_110 Hb_007479_010--Hb_000932_110 Hb_006681_020--Hb_001999_260 Hb_006681_020--Hb_004855_070 Hb_006583_030 Hb_006583_030 Hb_006681_020--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_006681_020--Hb_004117_150 Hb_006681_020--Hb_000009_510 Hb_007803_040 Hb_007803_040 Hb_005488_190--Hb_007803_040 Hb_002811_250 Hb_002811_250 Hb_005488_190--Hb_002811_250 Hb_005488_190--Hb_006681_020 Hb_009393_130 Hb_009393_130 Hb_005488_190--Hb_009393_130 Hb_000062_480 Hb_000062_480 Hb_005488_190--Hb_000062_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29166 2.05953 31.8989 10.1387 1.41934 0.755747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.698447 0.590237 0.576886 0.826966 30.7213

CAGE analysis