Hb_002496_010

Information

Type -
Description -
Location Contig2496: 17390-29209
Sequence    

Annotation

kegg
ID rcu:RCOM_1717970
description ganglioside induced differentiation associated protein, putative
nr
ID XP_012067735.1
description PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
swissprot
ID A7T167
description Protein GDAP2 homolog OS=Nematostella vectensis GN=gdap2 PE=3 SV=1
trembl
ID A0A067L246
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15675 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25947: 17907-29179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002496_010 0.0 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
2 Hb_000976_300 0.0598714071 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
3 Hb_007479_040 0.06690172 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000028_480 0.0681751924 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
5 Hb_002849_100 0.0702029481 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
6 Hb_002044_150 0.0744587577 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
7 Hb_002600_150 0.074900069 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
8 Hb_006274_030 0.0758451798 - - F-box and wd40 domain protein, putative [Ricinus communis]
9 Hb_029510_050 0.0764213728 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
10 Hb_062135_030 0.0781914968 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
11 Hb_000172_290 0.0783857277 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
12 Hb_000331_260 0.0798180045 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
13 Hb_001442_040 0.0801665429 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
14 Hb_002592_060 0.082619386 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000254_090 0.083201055 - - PREDICTED: la protein 2 [Jatropha curcas]
16 Hb_026198_070 0.0841030674 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
17 Hb_001141_020 0.0843599558 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
18 Hb_000521_250 0.084641473 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
19 Hb_156279_020 0.0854771435 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
20 Hb_001357_020 0.0863011428 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002496_010 Hb_002496_010 Hb_000976_300 Hb_000976_300 Hb_002496_010--Hb_000976_300 Hb_007479_040 Hb_007479_040 Hb_002496_010--Hb_007479_040 Hb_000028_480 Hb_000028_480 Hb_002496_010--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_002496_010--Hb_002849_100 Hb_002044_150 Hb_002044_150 Hb_002496_010--Hb_002044_150 Hb_002600_150 Hb_002600_150 Hb_002496_010--Hb_002600_150 Hb_000976_300--Hb_000028_480 Hb_001357_020 Hb_001357_020 Hb_000976_300--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_000976_300--Hb_002518_260 Hb_000977_110 Hb_000977_110 Hb_000976_300--Hb_000977_110 Hb_000976_300--Hb_002600_150 Hb_002110_190 Hb_002110_190 Hb_007479_040--Hb_002110_190 Hb_007479_040--Hb_000028_480 Hb_007479_040--Hb_002044_150 Hb_004567_090 Hb_004567_090 Hb_007479_040--Hb_004567_090 Hb_007479_040--Hb_002518_260 Hb_004254_090 Hb_004254_090 Hb_007479_040--Hb_004254_090 Hb_000028_480--Hb_002518_260 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050 Hb_188063_020 Hb_188063_020 Hb_002849_100--Hb_188063_020 Hb_010710_070 Hb_010710_070 Hb_002849_100--Hb_010710_070 Hb_004963_030 Hb_004963_030 Hb_002849_100--Hb_004963_030 Hb_004225_050 Hb_004225_050 Hb_002849_100--Hb_004225_050 Hb_000343_250 Hb_000343_250 Hb_002849_100--Hb_000343_250 Hb_002044_150--Hb_004254_090 Hb_026198_070 Hb_026198_070 Hb_002044_150--Hb_026198_070 Hb_168978_030 Hb_168978_030 Hb_002044_150--Hb_168978_030 Hb_000207_050 Hb_000207_050 Hb_002044_150--Hb_000207_050 Hb_000138_100 Hb_000138_100 Hb_002044_150--Hb_000138_100 Hb_000053_040 Hb_000053_040 Hb_002600_150--Hb_000053_040 Hb_012733_030 Hb_012733_030 Hb_002600_150--Hb_012733_030 Hb_002600_150--Hb_001357_020 Hb_002600_150--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002600_150--Hb_013726_090 Hb_001473_180 Hb_001473_180 Hb_002600_150--Hb_001473_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63398 4.04174 5.49053 5.60647 5.59264 8.87046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.42324 6.10293 8.16843 7.44326 9.20074

CAGE analysis