Hb_002496_020

Information

Type -
Description -
Location Contig2496: 31768-34968
Sequence    

Annotation

kegg
ID rcu:RCOM_1621770
description DNA binding protein, putative
nr
ID XP_002512121.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q5R5S1
description F-box only protein 21 OS=Pongo abelii GN=FBXO21 PE=2 SV=1
trembl
ID B9RCX3
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1621770 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25949: 31332-35299 , PASA_asmbl_25950: 32089-35203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002496_020 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_004191_020 0.0775312763 - - PREDICTED: cysteine synthase [Jatropha curcas]
3 Hb_000479_250 0.0793948253 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
4 Hb_004531_140 0.0850452297 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
5 Hb_001369_750 0.0859825888 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
6 Hb_005405_020 0.0885293591 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
7 Hb_001584_200 0.0886876604 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
8 Hb_010883_040 0.089083621 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
9 Hb_000224_160 0.0893062731 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_011021_020 0.0902231553 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
11 Hb_000172_580 0.0907120214 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_006274_030 0.0968447268 - - F-box and wd40 domain protein, putative [Ricinus communis]
13 Hb_003376_230 0.0993030303 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
14 Hb_001314_080 0.0993847265 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
15 Hb_001366_180 0.1009756535 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
16 Hb_002811_130 0.101627183 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
17 Hb_007811_030 0.101664542 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_011716_130 0.1018593121 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
19 Hb_001898_210 0.1041445671 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
20 Hb_011486_040 0.1046655026 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]

Gene co-expression network

sample Hb_002496_020 Hb_002496_020 Hb_004191_020 Hb_004191_020 Hb_002496_020--Hb_004191_020 Hb_000479_250 Hb_000479_250 Hb_002496_020--Hb_000479_250 Hb_004531_140 Hb_004531_140 Hb_002496_020--Hb_004531_140 Hb_001369_750 Hb_001369_750 Hb_002496_020--Hb_001369_750 Hb_005405_020 Hb_005405_020 Hb_002496_020--Hb_005405_020 Hb_001584_200 Hb_001584_200 Hb_002496_020--Hb_001584_200 Hb_000335_030 Hb_000335_030 Hb_004191_020--Hb_000335_030 Hb_006478_020 Hb_006478_020 Hb_004191_020--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_004191_020--Hb_001971_010 Hb_008790_030 Hb_008790_030 Hb_004191_020--Hb_008790_030 Hb_024128_020 Hb_024128_020 Hb_004191_020--Hb_024128_020 Hb_009328_020 Hb_009328_020 Hb_000479_250--Hb_009328_020 Hb_006274_030 Hb_006274_030 Hb_000479_250--Hb_006274_030 Hb_000479_250--Hb_001369_750 Hb_001366_180 Hb_001366_180 Hb_000479_250--Hb_001366_180 Hb_006275_070 Hb_006275_070 Hb_000479_250--Hb_006275_070 Hb_003153_010 Hb_003153_010 Hb_000479_250--Hb_003153_010 Hb_004531_140--Hb_000479_250 Hb_069662_010 Hb_069662_010 Hb_004531_140--Hb_069662_010 Hb_000181_130 Hb_000181_130 Hb_004531_140--Hb_000181_130 Hb_004531_140--Hb_009328_020 Hb_109000_020 Hb_109000_020 Hb_004531_140--Hb_109000_020 Hb_000261_060 Hb_000261_060 Hb_001369_750--Hb_000261_060 Hb_002276_020 Hb_002276_020 Hb_001369_750--Hb_002276_020 Hb_001369_750--Hb_001366_180 Hb_001369_750--Hb_006274_030 Hb_000212_440 Hb_000212_440 Hb_005405_020--Hb_000212_440 Hb_009225_020 Hb_009225_020 Hb_005405_020--Hb_009225_020 Hb_003376_230 Hb_003376_230 Hb_005405_020--Hb_003376_230 Hb_005405_020--Hb_003153_010 Hb_000797_040 Hb_000797_040 Hb_005405_020--Hb_000797_040 Hb_000224_160 Hb_000224_160 Hb_005405_020--Hb_000224_160 Hb_001584_200--Hb_000224_160 Hb_001584_200--Hb_003376_230 Hb_000462_090 Hb_000462_090 Hb_001584_200--Hb_000462_090 Hb_012022_150 Hb_012022_150 Hb_001584_200--Hb_012022_150 Hb_002374_240 Hb_002374_240 Hb_001584_200--Hb_002374_240 Hb_000172_580 Hb_000172_580 Hb_001584_200--Hb_000172_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.06491 1.92113 5.17401 6.86636 4.93852 7.17496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.88639 6.17158 5.23432 3.70211 12.1757

CAGE analysis