Hb_002496_050

Information

Type -
Description -
Location Contig2496: 44458-52113
Sequence    

Annotation

kegg
ID rcu:RCOM_1621800
description hypothetical protein
nr
ID XP_012067729.1
description PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LB08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15671 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25960: 46422-47356 , PASA_asmbl_25961: 47388-47835 , PASA_asmbl_25962: 47965-48378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002496_050 0.0 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
2 Hb_006915_050 0.0805348612 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
3 Hb_007672_050 0.089540048 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
4 Hb_000236_070 0.0937452811 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002253_070 0.0938155456 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
6 Hb_001017_040 0.0954012986 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
7 Hb_164926_030 0.095997335 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
8 Hb_007508_070 0.0967885449 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
9 Hb_001454_210 0.0986985358 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
10 Hb_000446_090 0.0992585677 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
11 Hb_004046_010 0.0997876083 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
12 Hb_000567_260 0.101623529 - - BnaA09g41440D [Brassica napus]
13 Hb_005396_130 0.1021478653 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
14 Hb_000648_110 0.102542834 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
15 Hb_005062_070 0.103046347 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
16 Hb_001329_300 0.1030754105 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
17 Hb_011918_080 0.1031098594 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
18 Hb_000630_070 0.1032920551 - - PREDICTED: cell division protein FtsZ homolog 2-1, chloroplastic [Jatropha curcas]
19 Hb_000614_230 0.1035680574 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
20 Hb_008695_210 0.1049319985 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_002496_050 Hb_002496_050 Hb_006915_050 Hb_006915_050 Hb_002496_050--Hb_006915_050 Hb_007672_050 Hb_007672_050 Hb_002496_050--Hb_007672_050 Hb_000236_070 Hb_000236_070 Hb_002496_050--Hb_000236_070 Hb_002253_070 Hb_002253_070 Hb_002496_050--Hb_002253_070 Hb_001017_040 Hb_001017_040 Hb_002496_050--Hb_001017_040 Hb_164926_030 Hb_164926_030 Hb_002496_050--Hb_164926_030 Hb_002016_110 Hb_002016_110 Hb_006915_050--Hb_002016_110 Hb_008695_210 Hb_008695_210 Hb_006915_050--Hb_008695_210 Hb_000754_040 Hb_000754_040 Hb_006915_050--Hb_000754_040 Hb_000111_360 Hb_000111_360 Hb_006915_050--Hb_000111_360 Hb_000907_080 Hb_000907_080 Hb_006915_050--Hb_000907_080 Hb_189003_080 Hb_189003_080 Hb_006915_050--Hb_189003_080 Hb_007672_050--Hb_164926_030 Hb_001277_330 Hb_001277_330 Hb_007672_050--Hb_001277_330 Hb_002686_290 Hb_002686_290 Hb_007672_050--Hb_002686_290 Hb_003376_040 Hb_003376_040 Hb_007672_050--Hb_003376_040 Hb_001828_140 Hb_001828_140 Hb_007672_050--Hb_001828_140 Hb_002205_070 Hb_002205_070 Hb_000236_070--Hb_002205_070 Hb_011316_040 Hb_011316_040 Hb_000236_070--Hb_011316_040 Hb_024185_020 Hb_024185_020 Hb_000236_070--Hb_024185_020 Hb_000107_620 Hb_000107_620 Hb_000236_070--Hb_000107_620 Hb_000648_110 Hb_000648_110 Hb_000236_070--Hb_000648_110 Hb_009838_080 Hb_009838_080 Hb_000236_070--Hb_009838_080 Hb_003032_040 Hb_003032_040 Hb_002253_070--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_002253_070--Hb_026527_030 Hb_005062_070 Hb_005062_070 Hb_002253_070--Hb_005062_070 Hb_000429_170 Hb_000429_170 Hb_002253_070--Hb_000429_170 Hb_001604_010 Hb_001604_010 Hb_002253_070--Hb_001604_010 Hb_001454_210 Hb_001454_210 Hb_002253_070--Hb_001454_210 Hb_000184_110 Hb_000184_110 Hb_001017_040--Hb_000184_110 Hb_000120_800 Hb_000120_800 Hb_001017_040--Hb_000120_800 Hb_005662_030 Hb_005662_030 Hb_001017_040--Hb_005662_030 Hb_000179_020 Hb_000179_020 Hb_001017_040--Hb_000179_020 Hb_005396_130 Hb_005396_130 Hb_001017_040--Hb_005396_130 Hb_002039_010 Hb_002039_010 Hb_001017_040--Hb_002039_010 Hb_164926_030--Hb_000111_360 Hb_164926_030--Hb_006915_050 Hb_164926_030--Hb_000754_040 Hb_000630_070 Hb_000630_070 Hb_164926_030--Hb_000630_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5787 6.05025 4.77262 5.4609 18.2017 20.6338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0815 11.9269 27.2266 8.29571 12.0066

CAGE analysis