Hb_002498_030

Information

Type -
Description -
Location Contig2498: 8241-9612
Sequence    

Annotation

kegg
ID rcu:RCOM_0903710
description hypothetical protein
nr
ID XP_002518443.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXH4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903710 PE=4 SV=1
Gene Ontology
ID GO:0016301
description wall-associated receptor kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25975: 8328-8917 , PASA_asmbl_25977: 9279-9455 , PASA_asmbl_25978: 9545-9644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_017439_010 0.1140425531 - - putative actin-97 protein [Linum usitatissimum]
3 Hb_000328_010 0.1296878815 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
4 Hb_001102_160 0.1403187087 - - PREDICTED: galacturonokinase [Jatropha curcas]
5 Hb_003408_010 0.1530915733 - - fructokinase [Manihot esculenta]
6 Hb_034726_010 0.1624202263 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000011_310 0.1679649775 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
8 Hb_001401_040 0.1680035365 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
9 Hb_002316_080 0.1710961573 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
10 Hb_010883_180 0.1711949558 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
11 Hb_000856_400 0.1740045286 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
12 Hb_010889_010 0.174079044 - - PREDICTED: myosin-12 [Jatropha curcas]
13 Hb_000920_230 0.1748537817 - - DNA binding protein, putative [Ricinus communis]
14 Hb_000023_110 0.1749011327 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
15 Hb_000003_210 0.1758450183 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
16 Hb_006157_010 0.1766290663 - - PREDICTED: endoglucanase 5 [Jatropha curcas]
17 Hb_001369_630 0.1774015461 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
18 Hb_000932_050 0.1774925856 - - annexin [Manihot esculenta]
19 Hb_003055_090 0.180157679 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
20 Hb_000920_160 0.180759449 - - annexin [Manihot esculenta]

Gene co-expression network

sample Hb_002498_030 Hb_002498_030 Hb_017439_010 Hb_017439_010 Hb_002498_030--Hb_017439_010 Hb_000328_010 Hb_000328_010 Hb_002498_030--Hb_000328_010 Hb_001102_160 Hb_001102_160 Hb_002498_030--Hb_001102_160 Hb_003408_010 Hb_003408_010 Hb_002498_030--Hb_003408_010 Hb_034726_010 Hb_034726_010 Hb_002498_030--Hb_034726_010 Hb_000011_310 Hb_000011_310 Hb_002498_030--Hb_000011_310 Hb_001401_040 Hb_001401_040 Hb_017439_010--Hb_001401_040 Hb_003055_090 Hb_003055_090 Hb_017439_010--Hb_003055_090 Hb_001268_160 Hb_001268_160 Hb_017439_010--Hb_001268_160 Hb_010889_010 Hb_010889_010 Hb_017439_010--Hb_010889_010 Hb_017439_010--Hb_000328_010 Hb_006153_160 Hb_006153_160 Hb_000328_010--Hb_006153_160 Hb_000193_340 Hb_000193_340 Hb_000328_010--Hb_000193_340 Hb_000086_210 Hb_000086_210 Hb_000328_010--Hb_000086_210 Hb_005144_120 Hb_005144_120 Hb_000328_010--Hb_005144_120 Hb_084147_010 Hb_084147_010 Hb_001102_160--Hb_084147_010 Hb_012395_110 Hb_012395_110 Hb_001102_160--Hb_012395_110 Hb_004007_070 Hb_004007_070 Hb_001102_160--Hb_004007_070 Hb_019516_060 Hb_019516_060 Hb_001102_160--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_001102_160--Hb_000086_090 Hb_000246_130 Hb_000246_130 Hb_001102_160--Hb_000246_130 Hb_000932_050 Hb_000932_050 Hb_003408_010--Hb_000932_050 Hb_001450_040 Hb_001450_040 Hb_003408_010--Hb_001450_040 Hb_003408_010--Hb_001401_040 Hb_000023_110 Hb_000023_110 Hb_003408_010--Hb_000023_110 Hb_000108_240 Hb_000108_240 Hb_003408_010--Hb_000108_240 Hb_008725_080 Hb_008725_080 Hb_003408_010--Hb_008725_080 Hb_003207_150 Hb_003207_150 Hb_034726_010--Hb_003207_150 Hb_000177_110 Hb_000177_110 Hb_034726_010--Hb_000177_110 Hb_053709_040 Hb_053709_040 Hb_034726_010--Hb_053709_040 Hb_001369_630 Hb_001369_630 Hb_034726_010--Hb_001369_630 Hb_034726_010--Hb_001102_160 Hb_001366_170 Hb_001366_170 Hb_034726_010--Hb_001366_170 Hb_000529_010 Hb_000529_010 Hb_000011_310--Hb_000529_010 Hb_009079_040 Hb_009079_040 Hb_000011_310--Hb_009079_040 Hb_004147_070 Hb_004147_070 Hb_000011_310--Hb_004147_070 Hb_001902_200 Hb_001902_200 Hb_000011_310--Hb_001902_200 Hb_005332_040 Hb_005332_040 Hb_000011_310--Hb_005332_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.387557 0.688566 7.24936 15.3476 0.153548 0.117833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75021 1.10134 1.34002 0.662587 4.32902

CAGE analysis