Hb_002498_060

Information

Type -
Description -
Location Contig2498: 38261-39691
Sequence    

Annotation

kegg
ID rcu:RCOM_0903740
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002518446.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID O22040
description Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 PE=1 SV=2
trembl
ID B9RXH7
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0903740 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25981: 38342-38852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_060 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_004306_060 0.1066250713 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
3 Hb_152439_020 0.119898662 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
4 Hb_000157_010 0.1292996158 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
5 Hb_004128_180 0.1308133019 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000236_140 0.1340436 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
7 Hb_001856_020 0.1351533791 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
8 Hb_000193_250 0.1360000864 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
9 Hb_000479_130 0.1373540856 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
10 Hb_000162_040 0.1400547249 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
11 Hb_005188_090 0.151693292 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
12 Hb_000059_220 0.1546805091 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
13 Hb_046198_010 0.1579696817 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
14 Hb_007075_050 0.1596254842 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000359_010 0.1599909466 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
16 Hb_005686_030 0.1599932246 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
17 Hb_004410_100 0.1605665681 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
18 Hb_000172_560 0.1636060532 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
19 Hb_000094_130 0.1640312497 - - PREDICTED: random slug protein 5 [Jatropha curcas]
20 Hb_003687_100 0.1646069975 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]

Gene co-expression network

sample Hb_002498_060 Hb_002498_060 Hb_004306_060 Hb_004306_060 Hb_002498_060--Hb_004306_060 Hb_152439_020 Hb_152439_020 Hb_002498_060--Hb_152439_020 Hb_000157_010 Hb_000157_010 Hb_002498_060--Hb_000157_010 Hb_004128_180 Hb_004128_180 Hb_002498_060--Hb_004128_180 Hb_000236_140 Hb_000236_140 Hb_002498_060--Hb_000236_140 Hb_001856_020 Hb_001856_020 Hb_002498_060--Hb_001856_020 Hb_000479_130 Hb_000479_130 Hb_004306_060--Hb_000479_130 Hb_000934_270 Hb_000934_270 Hb_004306_060--Hb_000934_270 Hb_004306_060--Hb_000236_140 Hb_000059_220 Hb_000059_220 Hb_004306_060--Hb_000059_220 Hb_000193_250 Hb_000193_250 Hb_004306_060--Hb_000193_250 Hb_152439_020--Hb_000193_250 Hb_152439_020--Hb_000157_010 Hb_183612_100 Hb_183612_100 Hb_152439_020--Hb_183612_100 Hb_152439_020--Hb_004306_060 Hb_143629_090 Hb_143629_090 Hb_152439_020--Hb_143629_090 Hb_010417_020 Hb_010417_020 Hb_000157_010--Hb_010417_020 Hb_001153_220 Hb_001153_220 Hb_000157_010--Hb_001153_220 Hb_000157_010--Hb_001856_020 Hb_024952_010 Hb_024952_010 Hb_000157_010--Hb_024952_010 Hb_011457_170 Hb_011457_170 Hb_000157_010--Hb_011457_170 Hb_004128_180--Hb_000236_140 Hb_000997_400 Hb_000997_400 Hb_004128_180--Hb_000997_400 Hb_000019_060 Hb_000019_060 Hb_004128_180--Hb_000019_060 Hb_004128_180--Hb_000059_220 Hb_027472_170 Hb_027472_170 Hb_004128_180--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_004128_180--Hb_000297_200 Hb_003687_100 Hb_003687_100 Hb_000236_140--Hb_003687_100 Hb_007416_270 Hb_007416_270 Hb_000236_140--Hb_007416_270 Hb_000236_140--Hb_000479_130 Hb_007075_050 Hb_007075_050 Hb_000236_140--Hb_007075_050 Hb_000172_560 Hb_000172_560 Hb_000236_140--Hb_000172_560 Hb_000179_050 Hb_000179_050 Hb_001856_020--Hb_000179_050 Hb_001856_020--Hb_000193_250 Hb_000056_100 Hb_000056_100 Hb_001856_020--Hb_000056_100 Hb_000124_020 Hb_000124_020 Hb_001856_020--Hb_000124_020 Hb_001123_230 Hb_001123_230 Hb_001856_020--Hb_001123_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69204 0.470415 0.344664 0.858334 2.5231 1.79064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02224 2.56825 6.85951 1.07764 0.433294

CAGE analysis