Hb_002498_160

Information

Type -
Description -
Location Contig2498: 95193-98502
Sequence    

Annotation

kegg
ID rcu:RCOM_0903850
description hypothetical protein
nr
ID XP_012091322.1
description PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21199 PE=4 SV=1
Gene Ontology
ID GO:0015996
description protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25988: 97256-98434 , PASA_asmbl_25989: 95218-98412 , PASA_asmbl_25990: 95261-98245
cDNA
(Sanger)
(ID:Location)		 016_M04.ab1: 97986-98434 , 021_E12.ab1: 96995-98412

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_160 0.0 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
2 Hb_169209_010 0.1004842358 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
3 Hb_000676_020 0.1067116784 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
4 Hb_000473_050 0.1135810184 - - chromatin regulatory protein sir2, putative [Ricinus communis]
5 Hb_000608_390 0.116739052 - - hypothetical protein B456_010G140700 [Gossypium raimondii]
6 Hb_002044_020 0.1218645886 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
7 Hb_002986_090 0.1258433525 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_001124_190 0.1260239653 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002627_040 0.1280757196 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
10 Hb_001711_060 0.1289152224 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
11 Hb_000820_140 0.1293288287 - - histone H4 [Zea mays]
12 Hb_001390_100 0.1339953701 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
13 Hb_009851_010 0.1346635954 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
14 Hb_000094_100 0.1346689287 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
15 Hb_189003_060 0.1356475025 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_012653_030 0.1364600595 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_000922_340 0.1379919906 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
18 Hb_001587_040 0.1394302434 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
19 Hb_002759_120 0.1410578343 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000116_250 0.1414036563 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]

Gene co-expression network

sample Hb_002498_160 Hb_002498_160 Hb_169209_010 Hb_169209_010 Hb_002498_160--Hb_169209_010 Hb_000676_020 Hb_000676_020 Hb_002498_160--Hb_000676_020 Hb_000473_050 Hb_000473_050 Hb_002498_160--Hb_000473_050 Hb_000608_390 Hb_000608_390 Hb_002498_160--Hb_000608_390 Hb_002044_020 Hb_002044_020 Hb_002498_160--Hb_002044_020 Hb_002986_090 Hb_002986_090 Hb_002498_160--Hb_002986_090 Hb_169209_010--Hb_000473_050 Hb_001124_190 Hb_001124_190 Hb_169209_010--Hb_001124_190 Hb_000922_340 Hb_000922_340 Hb_169209_010--Hb_000922_340 Hb_012653_030 Hb_012653_030 Hb_169209_010--Hb_012653_030 Hb_000820_140 Hb_000820_140 Hb_169209_010--Hb_000820_140 Hb_068194_010 Hb_068194_010 Hb_000676_020--Hb_068194_010 Hb_027506_040 Hb_027506_040 Hb_000676_020--Hb_027506_040 Hb_009851_010 Hb_009851_010 Hb_000676_020--Hb_009851_010 Hb_000676_020--Hb_000820_140 Hb_002205_140 Hb_002205_140 Hb_000676_020--Hb_002205_140 Hb_006829_080 Hb_006829_080 Hb_000473_050--Hb_006829_080 Hb_189003_060 Hb_189003_060 Hb_000473_050--Hb_189003_060 Hb_158092_100 Hb_158092_100 Hb_000473_050--Hb_158092_100 Hb_009687_020 Hb_009687_020 Hb_000473_050--Hb_009687_020 Hb_001959_060 Hb_001959_060 Hb_000473_050--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_000473_050--Hb_000684_430 Hb_163950_070 Hb_163950_070 Hb_000608_390--Hb_163950_070 Hb_000094_100 Hb_000094_100 Hb_000608_390--Hb_000094_100 Hb_005665_090 Hb_005665_090 Hb_000608_390--Hb_005665_090 Hb_000608_390--Hb_002986_090 Hb_000608_390--Hb_002044_020 Hb_002915_010 Hb_002915_010 Hb_000608_390--Hb_002915_010 Hb_029695_070 Hb_029695_070 Hb_002044_020--Hb_029695_070 Hb_002044_020--Hb_000094_100 Hb_001789_160 Hb_001789_160 Hb_002044_020--Hb_001789_160 Hb_000061_150 Hb_000061_150 Hb_002044_020--Hb_000061_150 Hb_000645_180 Hb_000645_180 Hb_002044_020--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_002044_020--Hb_000265_070 Hb_007217_010 Hb_007217_010 Hb_002986_090--Hb_007217_010 Hb_002986_090--Hb_163950_070 Hb_009288_040 Hb_009288_040 Hb_002986_090--Hb_009288_040 Hb_002986_090--Hb_000094_100 Hb_006907_060 Hb_006907_060 Hb_002986_090--Hb_006907_060 Hb_002986_090--Hb_001959_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08295 0.993 13.8855 6.48064 1.41814 1.52652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06966 2.59403 3.71775 2.59239 9.94315

CAGE analysis