Hb_002498_180

Information

Type -
Description -
Location Contig2498: 103374-105327
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11400g
description POPTRDRAFT_764577; hypothetical protein
nr
ID XP_012091323.1
description PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JML4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21200 PE=4 SV=1
Gene Ontology
ID GO:0006396
description u3 small nucleolar rna-associated protein 6 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25996: 103505-105258
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_180 0.0 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
2 Hb_000084_290 0.0941185265 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
3 Hb_003029_080 0.095495621 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
4 Hb_005489_130 0.1129353882 - - calmodulin, putative [Ricinus communis]
5 Hb_001623_330 0.1164846342 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
6 Hb_000042_300 0.1213426005 - - -
7 Hb_000045_130 0.122006925 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
8 Hb_005535_050 0.1235311416 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
9 Hb_007558_010 0.1240362416 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
10 Hb_000742_140 0.1248919975 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001369_650 0.1259577412 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
12 Hb_003376_320 0.1318096865 - - 60S ribosomal protein L12A [Hevea brasiliensis]
13 Hb_009767_120 0.1348004842 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
14 Hb_000101_270 0.1348977313 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
15 Hb_002983_010 0.1358660389 - - F-box family protein [Populus trichocarpa]
16 Hb_011537_010 0.1367657386 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
17 Hb_011828_050 0.1367697049 - - 40S ribosomal protein S23, putative [Ricinus communis]
18 Hb_004297_100 0.137328795 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
19 Hb_001504_070 0.1374920425 - - PREDICTED: 60S ribosomal protein L7-1 [Jatropha curcas]
20 Hb_001623_370 0.1376990569 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002498_180 Hb_002498_180 Hb_000084_290 Hb_000084_290 Hb_002498_180--Hb_000084_290 Hb_003029_080 Hb_003029_080 Hb_002498_180--Hb_003029_080 Hb_005489_130 Hb_005489_130 Hb_002498_180--Hb_005489_130 Hb_001623_330 Hb_001623_330 Hb_002498_180--Hb_001623_330 Hb_000042_300 Hb_000042_300 Hb_002498_180--Hb_000042_300 Hb_000045_130 Hb_000045_130 Hb_002498_180--Hb_000045_130 Hb_000742_140 Hb_000742_140 Hb_000084_290--Hb_000742_140 Hb_025236_040 Hb_025236_040 Hb_000084_290--Hb_025236_040 Hb_009767_120 Hb_009767_120 Hb_000084_290--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000084_290--Hb_011828_050 Hb_000349_060 Hb_000349_060 Hb_000084_290--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000084_290--Hb_002983_010 Hb_003029_080--Hb_001623_330 Hb_003058_070 Hb_003058_070 Hb_003029_080--Hb_003058_070 Hb_000483_160 Hb_000483_160 Hb_003029_080--Hb_000483_160 Hb_003001_060 Hb_003001_060 Hb_003029_080--Hb_003001_060 Hb_001821_120 Hb_001821_120 Hb_003029_080--Hb_001821_120 Hb_005489_130--Hb_000045_130 Hb_010449_020 Hb_010449_020 Hb_005489_130--Hb_010449_020 Hb_003688_100 Hb_003688_100 Hb_005489_130--Hb_003688_100 Hb_004722_060 Hb_004722_060 Hb_005489_130--Hb_004722_060 Hb_000808_040 Hb_000808_040 Hb_005489_130--Hb_000808_040 Hb_159558_030 Hb_159558_030 Hb_005489_130--Hb_159558_030 Hb_001369_650 Hb_001369_650 Hb_001623_330--Hb_001369_650 Hb_000866_300 Hb_000866_300 Hb_001623_330--Hb_000866_300 Hb_001623_330--Hb_003001_060 Hb_000392_270 Hb_000392_270 Hb_001623_330--Hb_000392_270 Hb_000977_080 Hb_000977_080 Hb_001623_330--Hb_000977_080 Hb_001623_330--Hb_000045_130 Hb_019962_030 Hb_019962_030 Hb_000042_300--Hb_019962_030 Hb_007007_050 Hb_007007_050 Hb_000042_300--Hb_007007_050 Hb_000139_350 Hb_000139_350 Hb_000042_300--Hb_000139_350 Hb_002292_010 Hb_002292_010 Hb_000042_300--Hb_002292_010 Hb_004363_010 Hb_004363_010 Hb_000042_300--Hb_004363_010 Hb_001898_230 Hb_001898_230 Hb_000042_300--Hb_001898_230 Hb_000045_130--Hb_000977_080 Hb_003551_020 Hb_003551_020 Hb_000045_130--Hb_003551_020 Hb_000045_130--Hb_001369_650 Hb_000045_130--Hb_000392_270 Hb_000019_230 Hb_000019_230 Hb_000045_130--Hb_000019_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.84104 3.68724 1.82669 2.08628 7.47765 8.05875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.62949 11.8907 2.0891 0.848793 0.343892

CAGE analysis