Hb_002498_200

Information

Type transcription factor
Description TF Family: G2-like
Location Contig2498: 111748-114576
Sequence    

Annotation

kegg
ID rcu:RCOM_0903890
description DNA binding protein, putative
nr
ID XP_012092370.1
description PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
swissprot
ID Q700D9
description Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2
trembl
ID B9RXJ2
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0903890 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_200 0.0 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
2 Hb_049438_010 0.1490487775 - - -
3 Hb_095413_040 0.1578102521 - - -
4 Hb_122567_010 0.192499376 - - -
5 Hb_017836_010 0.1929618939 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
6 Hb_000926_220 0.2002040341 - - -
7 Hb_011909_090 0.2215477522 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105633212 [Jatropha curcas]
8 Hb_075481_010 0.2484714558 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
9 Hb_158990_010 0.2496418508 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_001178_120 0.2618617362 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
11 Hb_049014_010 0.2655510683 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
12 Hb_000011_030 0.2657780202 - - hypothetical protein POPTR_0003s18920g [Populus trichocarpa]
13 Hb_000015_110 0.2657780202 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
14 Hb_000029_040 0.2657780202 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000030_110 0.2657780202 - - -
16 Hb_000034_130 0.2657780202 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_000046_470 0.2657780202 - - glutaredoxin, grx, putative [Ricinus communis]
18 Hb_000058_010 0.2657780202 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000060_140 0.2657780202 - - -
20 Hb_000070_020 0.2657780202 - - -

Gene co-expression network

sample Hb_002498_200 Hb_002498_200 Hb_049438_010 Hb_049438_010 Hb_002498_200--Hb_049438_010 Hb_095413_040 Hb_095413_040 Hb_002498_200--Hb_095413_040 Hb_122567_010 Hb_122567_010 Hb_002498_200--Hb_122567_010 Hb_017836_010 Hb_017836_010 Hb_002498_200--Hb_017836_010 Hb_000926_220 Hb_000926_220 Hb_002498_200--Hb_000926_220 Hb_011909_090 Hb_011909_090 Hb_002498_200--Hb_011909_090 Hb_049438_010--Hb_095413_040 Hb_049438_010--Hb_017836_010 Hb_049438_010--Hb_000926_220 Hb_000011_030 Hb_000011_030 Hb_049438_010--Hb_000011_030 Hb_000015_110 Hb_000015_110 Hb_049438_010--Hb_000015_110 Hb_095413_040--Hb_017836_010 Hb_095413_040--Hb_000926_220 Hb_003607_030 Hb_003607_030 Hb_095413_040--Hb_003607_030 Hb_009693_040 Hb_009693_040 Hb_095413_040--Hb_009693_040 Hb_049014_010 Hb_049014_010 Hb_122567_010--Hb_049014_010 Hb_000656_130 Hb_000656_130 Hb_122567_010--Hb_000656_130 Hb_075481_010 Hb_075481_010 Hb_122567_010--Hb_075481_010 Hb_000454_020 Hb_000454_020 Hb_122567_010--Hb_000454_020 Hb_142068_020 Hb_142068_020 Hb_122567_010--Hb_142068_020 Hb_178389_010 Hb_178389_010 Hb_122567_010--Hb_178389_010 Hb_017836_010--Hb_000926_220 Hb_017836_010--Hb_003607_030 Hb_017836_010--Hb_009693_040 Hb_007963_050 Hb_007963_050 Hb_017836_010--Hb_007963_050 Hb_000926_220--Hb_003607_030 Hb_000926_220--Hb_009693_040 Hb_000926_220--Hb_007963_050 Hb_011909_090--Hb_122567_010 Hb_003772_080 Hb_003772_080 Hb_011909_090--Hb_003772_080 Hb_001903_080 Hb_001903_080 Hb_011909_090--Hb_001903_080 Hb_019654_120 Hb_019654_120 Hb_011909_090--Hb_019654_120 Hb_001178_120 Hb_001178_120 Hb_011909_090--Hb_001178_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.421646 0 0 0 0.0444901 0.0209199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis