Hb_002498_210

Information

Type -
Description -
Location Contig2498: 116494-120963
Sequence    

Annotation

kegg
ID tcc:TCM_030247
description SKU5 similar 4 isoform 1
nr
ID XP_007026110.1
description SKU5 similar 4 isoform 3 [Theobroma cacao]
swissprot
ID Q00624
description L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1
trembl
ID A0A061GHW6
description SKU5 similar 4 isoform 3 OS=Theobroma cacao GN=TCM_030247 PE=4 SV=1
Gene Ontology
ID GO:0009987
description l-ascorbate oxidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_210 0.0 - - SKU5 similar 4 isoform 3 [Theobroma cacao]
2 Hb_002400_370 0.1377463788 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
3 Hb_000646_020 0.1929162457 - - putative gag protein [Coffea canephora]
4 Hb_000184_140 0.2270719006 - - conserved hypothetical protein [Ricinus communis]
5 Hb_076233_010 0.2299527116 - - conserved hypothetical protein [Ricinus communis]
6 Hb_083493_020 0.2329775196 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]
7 Hb_116360_010 0.2495117408 - - -
8 Hb_026620_010 0.2505765546 - - -
9 Hb_119600_020 0.2564510676 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_004242_070 0.2696479333 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
11 Hb_001114_030 0.2790438574 - - Brown planthopper resistance protein [Oryza sativa Indica Group]
12 Hb_007545_200 0.289063967 - - Pectinesterase-3 precursor, putative [Ricinus communis]
13 Hb_048944_020 0.2914872251 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
14 Hb_027506_050 0.3047440679 - - -
15 Hb_007075_020 0.3082300173 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
16 Hb_000624_020 0.3098261933 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]
17 Hb_000174_020 0.3123916029 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
18 Hb_000445_010 0.3174307645 - - PREDICTED: uncharacterized protein LOC105113411 [Populus euphratica]
19 Hb_001103_040 0.3193352818 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
20 Hb_010883_220 0.3195025811 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Prunus mume]

Gene co-expression network

sample Hb_002498_210 Hb_002498_210 Hb_002400_370 Hb_002400_370 Hb_002498_210--Hb_002400_370 Hb_000646_020 Hb_000646_020 Hb_002498_210--Hb_000646_020 Hb_000184_140 Hb_000184_140 Hb_002498_210--Hb_000184_140 Hb_076233_010 Hb_076233_010 Hb_002498_210--Hb_076233_010 Hb_083493_020 Hb_083493_020 Hb_002498_210--Hb_083493_020 Hb_116360_010 Hb_116360_010 Hb_002498_210--Hb_116360_010 Hb_004242_070 Hb_004242_070 Hb_002400_370--Hb_004242_070 Hb_002400_370--Hb_000184_140 Hb_002400_370--Hb_083493_020 Hb_002400_370--Hb_116360_010 Hb_000624_020 Hb_000624_020 Hb_002400_370--Hb_000624_020 Hb_000646_020--Hb_076233_010 Hb_001114_030 Hb_001114_030 Hb_000646_020--Hb_001114_030 Hb_001794_080 Hb_001794_080 Hb_000646_020--Hb_001794_080 Hb_000646_020--Hb_000184_140 Hb_026620_010 Hb_026620_010 Hb_000646_020--Hb_026620_010 Hb_000184_140--Hb_076233_010 Hb_007545_200 Hb_007545_200 Hb_000184_140--Hb_007545_200 Hb_020805_160 Hb_020805_160 Hb_000184_140--Hb_020805_160 Hb_076233_010--Hb_026620_010 Hb_119600_020 Hb_119600_020 Hb_076233_010--Hb_119600_020 Hb_076233_010--Hb_020805_160 Hb_076233_010--Hb_007545_200 Hb_083493_020--Hb_004242_070 Hb_001103_040 Hb_001103_040 Hb_083493_020--Hb_001103_040 Hb_003442_010 Hb_003442_010 Hb_083493_020--Hb_003442_010 Hb_000189_490 Hb_000189_490 Hb_083493_020--Hb_000189_490 Hb_157263_010 Hb_157263_010 Hb_083493_020--Hb_157263_010 Hb_052802_010 Hb_052802_010 Hb_116360_010--Hb_052802_010 Hb_000174_020 Hb_000174_020 Hb_116360_010--Hb_000174_020 Hb_116360_010--Hb_007545_200 Hb_008536_030 Hb_008536_030 Hb_116360_010--Hb_008536_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0289506 0.044386 0 0.0532544 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00831564 0

CAGE analysis