Hb_002498_240

Information

Type -
Description -
Location Contig2498: 132162-142295
Sequence    

Annotation

kegg
ID rcu:RCOM_0904160
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012091327.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
swissprot
ID O65399
description Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3
trembl
ID A0A067JL71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21206 PE=3 SV=1
Gene Ontology
ID GO:0005576
description glucan endo- -beta-glucosidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25998: 132271-135681 , PASA_asmbl_25999: 133142-133278 , PASA_asmbl_26000: 135683-136269 , PASA_asmbl_26001: 136671-136844 , PASA_asmbl_26002: 139335-142173 , PASA_asmbl_26004: 139752-140020 , PASA_asmbl_26005: 142248-142601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_240 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
2 Hb_005357_110 0.1084254245 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
3 Hb_001160_110 0.111077018 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
4 Hb_004730_020 0.1122034323 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
5 Hb_074399_010 0.1130320139 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
6 Hb_001123_110 0.1147320817 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003740_020 0.1187622627 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_005511_130 0.1193014989 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
9 Hb_000032_410 0.1230410226 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
10 Hb_002900_150 0.1230634653 - - PREDICTED: syntaxin-81 [Jatropha curcas]
11 Hb_001135_110 0.1243802271 - - -
12 Hb_000260_490 0.1252572159 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
13 Hb_003687_080 0.1254015765 - - PREDICTED: casein kinase I-like [Jatropha curcas]
14 Hb_164010_050 0.1279655761 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
15 Hb_001519_040 0.1327315169 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
16 Hb_000001_090 0.1327740125 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
17 Hb_000984_220 0.1350117944 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
18 Hb_029253_010 0.1350666334 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
19 Hb_000703_160 0.1351210279 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
20 Hb_000968_060 0.135396976 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]

Gene co-expression network

sample Hb_002498_240 Hb_002498_240 Hb_005357_110 Hb_005357_110 Hb_002498_240--Hb_005357_110 Hb_001160_110 Hb_001160_110 Hb_002498_240--Hb_001160_110 Hb_004730_020 Hb_004730_020 Hb_002498_240--Hb_004730_020 Hb_074399_010 Hb_074399_010 Hb_002498_240--Hb_074399_010 Hb_001123_110 Hb_001123_110 Hb_002498_240--Hb_001123_110 Hb_003740_020 Hb_003740_020 Hb_002498_240--Hb_003740_020 Hb_000032_410 Hb_000032_410 Hb_005357_110--Hb_000032_410 Hb_029253_010 Hb_029253_010 Hb_005357_110--Hb_029253_010 Hb_005357_110--Hb_003740_020 Hb_000915_130 Hb_000915_130 Hb_005357_110--Hb_000915_130 Hb_005357_110--Hb_004730_020 Hb_005511_130 Hb_005511_130 Hb_005357_110--Hb_005511_130 Hb_003687_080 Hb_003687_080 Hb_001160_110--Hb_003687_080 Hb_003160_070 Hb_003160_070 Hb_001160_110--Hb_003160_070 Hb_001663_130 Hb_001663_130 Hb_001160_110--Hb_001663_130 Hb_002026_090 Hb_002026_090 Hb_001160_110--Hb_002026_090 Hb_001160_110--Hb_000032_410 Hb_004158_050 Hb_004158_050 Hb_001160_110--Hb_004158_050 Hb_004730_020--Hb_005511_130 Hb_001579_300 Hb_001579_300 Hb_004730_020--Hb_001579_300 Hb_004730_020--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004730_020--Hb_000527_080 Hb_004730_020--Hb_003740_020 Hb_000703_160 Hb_000703_160 Hb_074399_010--Hb_000703_160 Hb_029584_120 Hb_029584_120 Hb_074399_010--Hb_029584_120 Hb_000258_220 Hb_000258_220 Hb_074399_010--Hb_000258_220 Hb_074399_010--Hb_003687_080 Hb_007919_110 Hb_007919_110 Hb_074399_010--Hb_007919_110 Hb_004013_030 Hb_004013_030 Hb_074399_010--Hb_004013_030 Hb_119583_020 Hb_119583_020 Hb_001123_110--Hb_119583_020 Hb_000959_190 Hb_000959_190 Hb_001123_110--Hb_000959_190 Hb_001123_110--Hb_005511_130 Hb_000984_220 Hb_000984_220 Hb_001123_110--Hb_000984_220 Hb_001123_110--Hb_001160_110 Hb_003740_020--Hb_029253_010 Hb_021409_070 Hb_021409_070 Hb_003740_020--Hb_021409_070 Hb_003740_020--Hb_005511_130 Hb_003740_020--Hb_000032_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.9939 10.5661 33.3584 26.4692 4.22419 6.21227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.0787 2.48726 1.748 6.60953 10.482

CAGE analysis