Hb_002498_250

Information

Type -
Description -
Location Contig2498: 145429-148317
Sequence    

Annotation

kegg
ID rcu:RCOM_0904170
description 5'-adenylylsulfate reductase 1, chloroplast precursor, putative (EC:1.8.4.9)
nr
ID XP_002518469.1
description 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P92980
description 5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2
trembl
ID B9RXK0
description 5'-adenylylsulfate reductase 1, chloroplast, putative OS=Ricinus communis GN=RCOM_0904170 PE=4 SV=1
Gene Ontology
ID GO:0005623
description 5 -adenylylsulfate reductase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26007: 145431-148330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_250 0.0 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
2 Hb_094437_050 0.0912698452 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
3 Hb_000373_250 0.1043873114 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
4 Hb_005725_280 0.1110263956 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
5 Hb_004218_080 0.1184845235 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
6 Hb_011930_120 0.1197954011 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
7 Hb_007120_010 0.1264046785 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
8 Hb_001623_410 0.12816894 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
9 Hb_000680_180 0.129911367 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
10 Hb_002936_030 0.137010095 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
11 Hb_007193_030 0.1380027574 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
12 Hb_001989_060 0.1389710154 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
13 Hb_000086_620 0.1391454108 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
14 Hb_000892_030 0.1415882127 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
15 Hb_000365_340 0.1434886172 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
16 Hb_002783_130 0.1445467933 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
17 Hb_000780_110 0.1510141234 - - cation-transporting atpase plant, putative [Ricinus communis]
18 Hb_002849_110 0.1512045218 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
19 Hb_000805_040 0.1519196701 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
20 Hb_003078_070 0.1532397457 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]

Gene co-expression network

sample Hb_002498_250 Hb_002498_250 Hb_094437_050 Hb_094437_050 Hb_002498_250--Hb_094437_050 Hb_000373_250 Hb_000373_250 Hb_002498_250--Hb_000373_250 Hb_005725_280 Hb_005725_280 Hb_002498_250--Hb_005725_280 Hb_004218_080 Hb_004218_080 Hb_002498_250--Hb_004218_080 Hb_011930_120 Hb_011930_120 Hb_002498_250--Hb_011930_120 Hb_007120_010 Hb_007120_010 Hb_002498_250--Hb_007120_010 Hb_001019_020 Hb_001019_020 Hb_094437_050--Hb_001019_020 Hb_000892_030 Hb_000892_030 Hb_094437_050--Hb_000892_030 Hb_094437_050--Hb_005725_280 Hb_002400_040 Hb_002400_040 Hb_094437_050--Hb_002400_040 Hb_000047_010 Hb_000047_010 Hb_094437_050--Hb_000047_010 Hb_000373_250--Hb_007120_010 Hb_005282_010 Hb_005282_010 Hb_000373_250--Hb_005282_010 Hb_000988_020 Hb_000988_020 Hb_000373_250--Hb_000988_020 Hb_002849_110 Hb_002849_110 Hb_000373_250--Hb_002849_110 Hb_001405_060 Hb_001405_060 Hb_000373_250--Hb_001405_060 Hb_000336_180 Hb_000336_180 Hb_005725_280--Hb_000336_180 Hb_005725_280--Hb_000892_030 Hb_005725_280--Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_005725_280--Hb_007193_030 Hb_004218_080--Hb_007193_030 Hb_000156_080 Hb_000156_080 Hb_004218_080--Hb_000156_080 Hb_000365_340 Hb_000365_340 Hb_004218_080--Hb_000365_340 Hb_003106_240 Hb_003106_240 Hb_004218_080--Hb_003106_240 Hb_001579_070 Hb_001579_070 Hb_011930_120--Hb_001579_070 Hb_000680_180 Hb_000680_180 Hb_011930_120--Hb_000680_180 Hb_000086_620 Hb_000086_620 Hb_011930_120--Hb_000086_620 Hb_001989_060 Hb_001989_060 Hb_011930_120--Hb_001989_060 Hb_000805_040 Hb_000805_040 Hb_011930_120--Hb_000805_040 Hb_007120_010--Hb_001989_060 Hb_007120_010--Hb_000805_040 Hb_001863_270 Hb_001863_270 Hb_007120_010--Hb_001863_270 Hb_000045_140 Hb_000045_140 Hb_007120_010--Hb_000045_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.72442 159.931 100.691 74.1753 3.20275 7.72117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91841 4.5008 4.23925 2.94943 39.8911

CAGE analysis