Hb_002498_270

Information

Type -
Description -
Location Contig2498: 157876-166572
Sequence    

Annotation

kegg
ID rcu:RCOM_0904290
description prephenate dehydratase, putative (EC:4.2.1.51)
nr
ID XP_002518471.1
description prephenate dehydratase, putative [Ricinus communis]
swissprot
ID Q9SA96
description Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1
trembl
ID B9RXK2
description Prephenate dehydratase, putative OS=Ricinus communis GN=RCOM_0904290 PE=4 SV=1
Gene Ontology
ID GO:0016829
description arogenate dehydratase prephenate dehydratase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_270 0.0 - - prephenate dehydratase, putative [Ricinus communis]
2 Hb_000889_010 0.1506698917 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
3 Hb_002781_050 0.1516332306 - - cytochrome B5 isoform 1, putative [Ricinus communis]
4 Hb_001946_310 0.1679512375 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
5 Hb_000684_520 0.172155903 - - glutathione S-transferase L3-like [Jatropha curcas]
6 Hb_002627_020 0.1751278929 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
7 Hb_000175_470 0.1761411768 - - lactoylglutathione lyase, putative [Ricinus communis]
8 Hb_001799_060 0.1784116061 - - Rab6 [Hevea brasiliensis]
9 Hb_048476_060 0.1786633553 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
10 Hb_001148_090 0.1818910479 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
11 Hb_002477_010 0.1829366421 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000656_190 0.1835465872 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]
13 Hb_001769_060 0.1836144641 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
14 Hb_000027_210 0.1860203213 - - Os01g0689300, partial [Oryza sativa Japonica Group]
15 Hb_000110_050 0.1875753772 - - -
16 Hb_005054_220 0.188528165 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
17 Hb_002539_040 0.1916495128 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
18 Hb_009898_040 0.1922350581 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003305_020 0.1941749137 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
20 Hb_003602_020 0.1976459822 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_002498_270 Hb_002498_270 Hb_000889_010 Hb_000889_010 Hb_002498_270--Hb_000889_010 Hb_002781_050 Hb_002781_050 Hb_002498_270--Hb_002781_050 Hb_001946_310 Hb_001946_310 Hb_002498_270--Hb_001946_310 Hb_000684_520 Hb_000684_520 Hb_002498_270--Hb_000684_520 Hb_002627_020 Hb_002627_020 Hb_002498_270--Hb_002627_020 Hb_000175_470 Hb_000175_470 Hb_002498_270--Hb_000175_470 Hb_009898_040 Hb_009898_040 Hb_000889_010--Hb_009898_040 Hb_004449_180 Hb_004449_180 Hb_000889_010--Hb_004449_180 Hb_000889_010--Hb_000684_520 Hb_001799_060 Hb_001799_060 Hb_000889_010--Hb_001799_060 Hb_168893_020 Hb_168893_020 Hb_000889_010--Hb_168893_020 Hb_001148_090 Hb_001148_090 Hb_000889_010--Hb_001148_090 Hb_000696_070 Hb_000696_070 Hb_002781_050--Hb_000696_070 Hb_003602_020 Hb_003602_020 Hb_002781_050--Hb_003602_020 Hb_001148_100 Hb_001148_100 Hb_002781_050--Hb_001148_100 Hb_002781_050--Hb_001148_090 Hb_001369_630 Hb_001369_630 Hb_002781_050--Hb_001369_630 Hb_048476_060 Hb_048476_060 Hb_002781_050--Hb_048476_060 Hb_000800_090 Hb_000800_090 Hb_001946_310--Hb_000800_090 Hb_001946_310--Hb_001799_060 Hb_000402_130 Hb_000402_130 Hb_001946_310--Hb_000402_130 Hb_001318_050 Hb_001318_050 Hb_001946_310--Hb_001318_050 Hb_003305_020 Hb_003305_020 Hb_001946_310--Hb_003305_020 Hb_000025_190 Hb_000025_190 Hb_001946_310--Hb_000025_190 Hb_001510_020 Hb_001510_020 Hb_000684_520--Hb_001510_020 Hb_000684_520--Hb_168893_020 Hb_010560_050 Hb_010560_050 Hb_000684_520--Hb_010560_050 Hb_004429_090 Hb_004429_090 Hb_000684_520--Hb_004429_090 Hb_000187_040 Hb_000187_040 Hb_000684_520--Hb_000187_040 Hb_000210_060 Hb_000210_060 Hb_000684_520--Hb_000210_060 Hb_002960_090 Hb_002960_090 Hb_002627_020--Hb_002960_090 Hb_000172_280 Hb_000172_280 Hb_002627_020--Hb_000172_280 Hb_002627_020--Hb_000175_470 Hb_027380_190 Hb_027380_190 Hb_002627_020--Hb_027380_190 Hb_000310_120 Hb_000310_120 Hb_002627_020--Hb_000310_120 Hb_000648_050 Hb_000648_050 Hb_002627_020--Hb_000648_050 Hb_002539_040 Hb_002539_040 Hb_000175_470--Hb_002539_040 Hb_000175_470--Hb_001148_100 Hb_143766_080 Hb_143766_080 Hb_000175_470--Hb_143766_080 Hb_005408_070 Hb_005408_070 Hb_000175_470--Hb_005408_070 Hb_172706_020 Hb_172706_020 Hb_000175_470--Hb_172706_020 Hb_000567_180 Hb_000567_180 Hb_000175_470--Hb_000567_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.422617 0.595704 3.47272 7.73564 0.0111625 1.34691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52285 2.79595 0.886065 4.83142 2.37786

CAGE analysis