Hb_002498_280

Information

Type -
Description -
Location Contig2498: 170306-172685
Sequence    

Annotation

kegg
ID rcu:RCOM_0904300
description protein binding protein, putative
nr
ID XP_012092371.1
description PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
swissprot
ID Q5F259
description Ankyrin repeat domain-containing protein 13B OS=Mus musculus GN=Ankrd13b PE=2 SV=1
trembl
ID A0A067JMM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26009: 170379-170609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_280 0.0 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
2 Hb_002217_420 0.122341603 - - hypothetical protein EUTSA_v10021493mg [Eutrema salsugineum]
3 Hb_011519_030 0.1731040804 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
4 Hb_003058_110 0.1982261882 - - PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
5 Hb_000115_310 0.2157937037 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
6 Hb_004355_030 0.2172043648 - - fumarylacetoacetate hydrolase, putative [Ricinus communis]
7 Hb_094022_010 0.2173211876 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
8 Hb_000347_280 0.2219448728 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
9 Hb_000310_080 0.2229018395 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
10 Hb_007632_110 0.222979658 - - chromatin regulatory protein sir2, putative [Ricinus communis]
11 Hb_001158_040 0.2243071198 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
12 Hb_000367_200 0.2244764907 - - hypothetical protein CISIN_1g0362003mg, partial [Citrus sinensis]
13 Hb_000207_120 0.225366615 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
14 Hb_000207_130 0.2267504586 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
15 Hb_003388_050 0.231185318 - - -
16 Hb_002675_260 0.2323121496 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
17 Hb_001946_260 0.2327128883 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
18 Hb_002893_020 0.2332920166 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
19 Hb_007083_010 0.2341092776 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
20 Hb_000270_460 0.2344878977 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]

Gene co-expression network

sample Hb_002498_280 Hb_002498_280 Hb_002217_420 Hb_002217_420 Hb_002498_280--Hb_002217_420 Hb_011519_030 Hb_011519_030 Hb_002498_280--Hb_011519_030 Hb_003058_110 Hb_003058_110 Hb_002498_280--Hb_003058_110 Hb_000115_310 Hb_000115_310 Hb_002498_280--Hb_000115_310 Hb_004355_030 Hb_004355_030 Hb_002498_280--Hb_004355_030 Hb_094022_010 Hb_094022_010 Hb_002498_280--Hb_094022_010 Hb_002217_420--Hb_000115_310 Hb_000010_250 Hb_000010_250 Hb_002217_420--Hb_000010_250 Hb_002890_210 Hb_002890_210 Hb_002217_420--Hb_002890_210 Hb_002217_420--Hb_094022_010 Hb_039894_010 Hb_039894_010 Hb_002217_420--Hb_039894_010 Hb_000207_120 Hb_000207_120 Hb_011519_030--Hb_000207_120 Hb_000009_480 Hb_000009_480 Hb_011519_030--Hb_000009_480 Hb_003858_040 Hb_003858_040 Hb_011519_030--Hb_003858_040 Hb_176152_010 Hb_176152_010 Hb_011519_030--Hb_176152_010 Hb_000376_090 Hb_000376_090 Hb_011519_030--Hb_000376_090 Hb_000207_130 Hb_000207_130 Hb_003058_110--Hb_000207_130 Hb_007632_110 Hb_007632_110 Hb_003058_110--Hb_007632_110 Hb_000351_140 Hb_000351_140 Hb_003058_110--Hb_000351_140 Hb_002007_350 Hb_002007_350 Hb_003058_110--Hb_002007_350 Hb_001486_080 Hb_001486_080 Hb_003058_110--Hb_001486_080 Hb_016461_010 Hb_016461_010 Hb_003058_110--Hb_016461_010 Hb_000115_310--Hb_039894_010 Hb_001140_250 Hb_001140_250 Hb_000115_310--Hb_001140_250 Hb_004586_180 Hb_004586_180 Hb_000115_310--Hb_004586_180 Hb_003747_010 Hb_003747_010 Hb_000115_310--Hb_003747_010 Hb_005122_080 Hb_005122_080 Hb_000115_310--Hb_005122_080 Hb_000029_160 Hb_000029_160 Hb_000115_310--Hb_000029_160 Hb_166236_010 Hb_166236_010 Hb_004355_030--Hb_166236_010 Hb_002217_510 Hb_002217_510 Hb_004355_030--Hb_002217_510 Hb_000020_150 Hb_000020_150 Hb_004355_030--Hb_000020_150 Hb_002675_260 Hb_002675_260 Hb_004355_030--Hb_002675_260 Hb_000221_250 Hb_000221_250 Hb_004355_030--Hb_000221_250 Hb_010417_080 Hb_010417_080 Hb_004355_030--Hb_010417_080 Hb_000699_130 Hb_000699_130 Hb_094022_010--Hb_000699_130 Hb_003752_080 Hb_003752_080 Hb_094022_010--Hb_003752_080 Hb_000529_080 Hb_000529_080 Hb_094022_010--Hb_000529_080 Hb_000002_330 Hb_000002_330 Hb_094022_010--Hb_000002_330 Hb_000342_110 Hb_000342_110 Hb_094022_010--Hb_000342_110 Hb_007803_010 Hb_007803_010 Hb_094022_010--Hb_007803_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.50422 1.47644 1.78532 1.4039 3.56379 1.30923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73949 2.04398 0.492758 3.85309 0.235329

CAGE analysis