Hb_002499_040

Information

Type -
Description -
Location Contig2499: 59970-101397
Sequence    

Annotation

kegg
ID pmum:103322420
description probable serine/threonine-protein kinase GCN2
nr
ID XP_012065156.1
description PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
swissprot
ID Q9LX30
description Probable serine/threonine-protein kinase GCN2 OS=Arabidopsis thaliana GN=GCN2 PE=2 SV=2
trembl
ID A0A061EKG5
description Kinase family protein isoform 2 OS=Theobroma cacao GN=TCM_020045 PE=4 SV=1
Gene Ontology
ID GO:0004693
description probable serine threonine-protein kinase gcn2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26017: 61949-65072 , PASA_asmbl_26019: 80219-84649 , PASA_asmbl_26020: 86168-93182 , PASA_asmbl_26021: 91070-91580 , PASA_asmbl_26022: 98611-99399 , PASA_asmbl_26023: 99430-101438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002499_040 0.0 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
2 Hb_000757_060 0.0561880685 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
3 Hb_000538_270 0.0638983341 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
4 Hb_000504_140 0.0661393667 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
5 Hb_000556_160 0.0667789292 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
6 Hb_002686_030 0.0678304537 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
7 Hb_001226_040 0.0691401949 - - protein with unknown function [Ricinus communis]
8 Hb_000010_400 0.07122321 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
9 Hb_003158_010 0.0719186801 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
10 Hb_000030_300 0.073089247 - - Thioredoxin, putative [Ricinus communis]
11 Hb_000289_060 0.0745551404 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
12 Hb_001242_060 0.0746118707 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
13 Hb_000011_200 0.0746951767 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
14 Hb_006913_030 0.0751999673 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
15 Hb_000317_240 0.0754134192 - - PREDICTED: protein DYAD [Jatropha curcas]
16 Hb_167498_010 0.0756635516 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
17 Hb_005779_060 0.0772010839 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
18 Hb_000629_010 0.0776742897 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
19 Hb_058999_020 0.0779003018 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
20 Hb_002107_030 0.0783297383 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002499_040 Hb_002499_040 Hb_000757_060 Hb_000757_060 Hb_002499_040--Hb_000757_060 Hb_000538_270 Hb_000538_270 Hb_002499_040--Hb_000538_270 Hb_000504_140 Hb_000504_140 Hb_002499_040--Hb_000504_140 Hb_000556_160 Hb_000556_160 Hb_002499_040--Hb_000556_160 Hb_002686_030 Hb_002686_030 Hb_002499_040--Hb_002686_030 Hb_001226_040 Hb_001226_040 Hb_002499_040--Hb_001226_040 Hb_058999_020 Hb_058999_020 Hb_000757_060--Hb_058999_020 Hb_001242_060 Hb_001242_060 Hb_000757_060--Hb_001242_060 Hb_000757_060--Hb_000538_270 Hb_000317_240 Hb_000317_240 Hb_000757_060--Hb_000317_240 Hb_001248_060 Hb_001248_060 Hb_000757_060--Hb_001248_060 Hb_007416_180 Hb_007416_180 Hb_000538_270--Hb_007416_180 Hb_000538_270--Hb_002686_030 Hb_000289_060 Hb_000289_060 Hb_000538_270--Hb_000289_060 Hb_001005_190 Hb_001005_190 Hb_000538_270--Hb_001005_190 Hb_001157_040 Hb_001157_040 Hb_000538_270--Hb_001157_040 Hb_005539_280 Hb_005539_280 Hb_000504_140--Hb_005539_280 Hb_001758_100 Hb_001758_100 Hb_000504_140--Hb_001758_100 Hb_005779_060 Hb_005779_060 Hb_000504_140--Hb_005779_060 Hb_001633_050 Hb_001633_050 Hb_000504_140--Hb_001633_050 Hb_000504_140--Hb_000317_240 Hb_005618_170 Hb_005618_170 Hb_000504_140--Hb_005618_170 Hb_000556_160--Hb_002686_030 Hb_001341_170 Hb_001341_170 Hb_000556_160--Hb_001341_170 Hb_004724_150 Hb_004724_150 Hb_000556_160--Hb_004724_150 Hb_003294_070 Hb_003294_070 Hb_000556_160--Hb_003294_070 Hb_000185_030 Hb_000185_030 Hb_000556_160--Hb_000185_030 Hb_002686_030--Hb_000289_060 Hb_017862_020 Hb_017862_020 Hb_002686_030--Hb_017862_020 Hb_007163_120 Hb_007163_120 Hb_002686_030--Hb_007163_120 Hb_005348_140 Hb_005348_140 Hb_001226_040--Hb_005348_140 Hb_001226_040--Hb_000757_060 Hb_001226_040--Hb_000538_270 Hb_001226_040--Hb_000556_160 Hb_008221_140 Hb_008221_140 Hb_001226_040--Hb_008221_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.06575 3.48852 3.23523 2.03952 3.90524 4.44302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.55467 4.94048 5.12168 4.51849 2.87456

CAGE analysis