Hb_002499_050

Information

Type -
Description -
Location Contig2499: 103738-106191
Sequence    

Annotation

kegg
ID rcu:RCOM_0656320
description receptor protein kinase, putative (EC:2.7.11.30)
nr
ID XP_002533445.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q9LX29
description Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1
trembl
ID B9T5C6
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_0656320 PE=3 SV=1
Gene Ontology
ID GO:0009986
description serine threonine-protein kinase-like protein acr4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26026: 105001-105211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002499_050 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_000084_210 0.0734149795 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
3 Hb_001369_590 0.0751668284 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
4 Hb_006620_030 0.0806618975 - - nitrate reductase, putative [Ricinus communis]
5 Hb_000282_020 0.0903221951 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
6 Hb_005365_040 0.0942062528 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
7 Hb_048141_050 0.0943266401 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
8 Hb_105148_020 0.0949194575 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
9 Hb_000152_650 0.1000121805 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_001166_010 0.106594245 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
11 Hb_104014_010 0.106952017 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
12 Hb_019053_040 0.1079801675 - - cytochrome P450, putative [Ricinus communis]
13 Hb_022167_010 0.1133905906 - - Kinase, putative isoform 2 [Theobroma cacao]
14 Hb_002561_040 0.113616304 - - Photosynthetic electron transfer C [Theobroma cacao]
15 Hb_002121_030 0.1150085784 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
16 Hb_002710_040 0.1152918798 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
17 Hb_033834_020 0.1154281949 - - conserved hypothetical protein [Ricinus communis]
18 Hb_023827_030 0.1169846345 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
19 Hb_046590_010 0.1171067557 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
20 Hb_000188_070 0.1180520948 - - calcineurin-like phosphoesterase [Manihot esculenta]

Gene co-expression network

sample Hb_002499_050 Hb_002499_050 Hb_000084_210 Hb_000084_210 Hb_002499_050--Hb_000084_210 Hb_001369_590 Hb_001369_590 Hb_002499_050--Hb_001369_590 Hb_006620_030 Hb_006620_030 Hb_002499_050--Hb_006620_030 Hb_000282_020 Hb_000282_020 Hb_002499_050--Hb_000282_020 Hb_005365_040 Hb_005365_040 Hb_002499_050--Hb_005365_040 Hb_048141_050 Hb_048141_050 Hb_002499_050--Hb_048141_050 Hb_002561_040 Hb_002561_040 Hb_000084_210--Hb_002561_040 Hb_004627_050 Hb_004627_050 Hb_000084_210--Hb_004627_050 Hb_000084_210--Hb_001369_590 Hb_002259_020 Hb_002259_020 Hb_000084_210--Hb_002259_020 Hb_011512_100 Hb_011512_100 Hb_000084_210--Hb_011512_100 Hb_001369_590--Hb_005365_040 Hb_002121_030 Hb_002121_030 Hb_001369_590--Hb_002121_030 Hb_001369_590--Hb_006620_030 Hb_000152_650 Hb_000152_650 Hb_001369_590--Hb_000152_650 Hb_006501_080 Hb_006501_080 Hb_006620_030--Hb_006501_080 Hb_105148_020 Hb_105148_020 Hb_006620_030--Hb_105148_020 Hb_004308_030 Hb_004308_030 Hb_006620_030--Hb_004308_030 Hb_129956_010 Hb_129956_010 Hb_006620_030--Hb_129956_010 Hb_019053_040 Hb_019053_040 Hb_000282_020--Hb_019053_040 Hb_000069_440 Hb_000069_440 Hb_000282_020--Hb_000069_440 Hb_004411_010 Hb_004411_010 Hb_000282_020--Hb_004411_010 Hb_000005_060 Hb_000005_060 Hb_000282_020--Hb_000005_060 Hb_023582_010 Hb_023582_010 Hb_000282_020--Hb_023582_010 Hb_023827_030 Hb_023827_030 Hb_000282_020--Hb_023827_030 Hb_000051_150 Hb_000051_150 Hb_005365_040--Hb_000051_150 Hb_000187_100 Hb_000187_100 Hb_005365_040--Hb_000187_100 Hb_000160_260 Hb_000160_260 Hb_005365_040--Hb_000160_260 Hb_005365_040--Hb_002121_030 Hb_005365_040--Hb_000084_210 Hb_004346_050 Hb_004346_050 Hb_048141_050--Hb_004346_050 Hb_016371_010 Hb_016371_010 Hb_048141_050--Hb_016371_010 Hb_179129_010 Hb_179129_010 Hb_048141_050--Hb_179129_010 Hb_048141_050--Hb_004411_010 Hb_078954_030 Hb_078954_030 Hb_048141_050--Hb_078954_030 Hb_000087_040 Hb_000087_040 Hb_048141_050--Hb_000087_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.121872 1.82381 0.419992 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0180285 0 0 0.0112684 0.693263

CAGE analysis