Hb_002499_070

Information

Type -
Description -
Location Contig2499: 118371-132535
Sequence    

Annotation

kegg
ID pop:POPTR_0007s01970g
description POPTRDRAFT_562237; hypothetical protein
nr
ID XP_012065159.1
description PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20845 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26030: 116477-121993 , PASA_asmbl_26031: 117781-121803 , PASA_asmbl_26032: 118335-118830 , PASA_asmbl_26033: 126747-126935 , PASA_asmbl_26034: 127170-128331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002499_070 0.0 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
2 Hb_004162_280 0.0728111809 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
3 Hb_144787_030 0.0737474842 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
4 Hb_005895_040 0.0783522329 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
5 Hb_001902_060 0.0786574044 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
6 Hb_002411_120 0.0820771635 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
7 Hb_000152_340 0.0821175018 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
8 Hb_001771_120 0.0838585311 - - K+ transport growth defect-like protein [Hevea brasiliensis]
9 Hb_000422_140 0.0849243101 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
10 Hb_000032_490 0.0850682748 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
11 Hb_000424_010 0.0865775279 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
12 Hb_002477_130 0.0879088544 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001502_060 0.089791076 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
14 Hb_001616_050 0.0907227974 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
15 Hb_000946_120 0.0912807007 - - DNA binding protein, putative [Ricinus communis]
16 Hb_002351_020 0.0915768924 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
17 Hb_002221_050 0.0919343247 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
18 Hb_001541_260 0.0919945455 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
19 Hb_000861_070 0.0927024215 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000529_260 0.0935893999 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]

Gene co-expression network

sample Hb_002499_070 Hb_002499_070 Hb_004162_280 Hb_004162_280 Hb_002499_070--Hb_004162_280 Hb_144787_030 Hb_144787_030 Hb_002499_070--Hb_144787_030 Hb_005895_040 Hb_005895_040 Hb_002499_070--Hb_005895_040 Hb_001902_060 Hb_001902_060 Hb_002499_070--Hb_001902_060 Hb_002411_120 Hb_002411_120 Hb_002499_070--Hb_002411_120 Hb_000152_340 Hb_000152_340 Hb_002499_070--Hb_000152_340 Hb_004162_280--Hb_144787_030 Hb_175338_020 Hb_175338_020 Hb_004162_280--Hb_175338_020 Hb_001541_020 Hb_001541_020 Hb_004162_280--Hb_001541_020 Hb_000236_100 Hb_000236_100 Hb_004162_280--Hb_000236_100 Hb_000510_310 Hb_000510_310 Hb_004162_280--Hb_000510_310 Hb_000139_250 Hb_000139_250 Hb_004162_280--Hb_000139_250 Hb_001541_260 Hb_001541_260 Hb_144787_030--Hb_001541_260 Hb_144787_030--Hb_000139_250 Hb_000946_120 Hb_000946_120 Hb_144787_030--Hb_000946_120 Hb_144787_030--Hb_000236_100 Hb_000422_140 Hb_000422_140 Hb_144787_030--Hb_000422_140 Hb_005895_040--Hb_000422_140 Hb_009151_020 Hb_009151_020 Hb_005895_040--Hb_009151_020 Hb_002477_130 Hb_002477_130 Hb_005895_040--Hb_002477_130 Hb_004656_060 Hb_004656_060 Hb_005895_040--Hb_004656_060 Hb_004701_030 Hb_004701_030 Hb_005895_040--Hb_004701_030 Hb_001902_060--Hb_000152_340 Hb_000544_060 Hb_000544_060 Hb_001902_060--Hb_000544_060 Hb_000920_250 Hb_000920_250 Hb_001902_060--Hb_000920_250 Hb_007676_100 Hb_007676_100 Hb_001902_060--Hb_007676_100 Hb_001141_370 Hb_001141_370 Hb_001902_060--Hb_001141_370 Hb_000594_020 Hb_000594_020 Hb_002411_120--Hb_000594_020 Hb_002411_120--Hb_009151_020 Hb_001080_270 Hb_001080_270 Hb_002411_120--Hb_001080_270 Hb_020665_030 Hb_020665_030 Hb_002411_120--Hb_020665_030 Hb_004899_070 Hb_004899_070 Hb_002411_120--Hb_004899_070 Hb_000953_030 Hb_000953_030 Hb_000152_340--Hb_000953_030 Hb_000140_080 Hb_000140_080 Hb_000152_340--Hb_000140_080 Hb_000032_010 Hb_000032_010 Hb_000152_340--Hb_000032_010 Hb_000116_060 Hb_000116_060 Hb_000152_340--Hb_000116_060 Hb_003858_090 Hb_003858_090 Hb_000152_340--Hb_003858_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.02233 6.38788 2.57702 2.04426 9.9433 6.73964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62347 3.21962 2.9139 2.42672 1.97268

CAGE analysis