Hb_002503_050

Information

Type transcription factor
Description TF Family: HB
Location Contig2503: 29877-33874
Sequence    

Annotation

kegg
ID rcu:RCOM_1456530
description homeobox protein, putative
nr
ID XP_002527933.1
description homeobox protein, putative [Ricinus communis]
swissprot
ID Q9FX31
description Homeobox-leucine zipper protein HDG11 OS=Arabidopsis thaliana GN=HDG11 PE=1 SV=1
trembl
ID B9SPL4
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_1456530 PE=4 SV=1
Gene Ontology
ID GO:0008289
description homeobox-leucine zipper protein hdg11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26195: 32417-33271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002503_050 0.0 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
2 Hb_000189_160 0.0826434948 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
3 Hb_014250_010 0.0945825722 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
4 Hb_001345_020 0.1069825858 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
5 Hb_000046_430 0.1086813321 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
6 Hb_000760_080 0.1103685903 - - mutt domain protein, putative [Ricinus communis]
7 Hb_009554_030 0.1138549704 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
8 Hb_021346_020 0.114074835 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
9 Hb_003224_010 0.1189212162 - - -
10 Hb_003881_020 0.1194126761 - - PREDICTED: stellacyanin-like [Jatropha curcas]
11 Hb_000096_210 0.1217381455 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
12 Hb_004627_020 0.1237889869 - - Protein MLO, putative [Ricinus communis]
13 Hb_137272_010 0.1270625977 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
14 Hb_083412_010 0.1272423434 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
15 Hb_000866_190 0.1277337333 - - transcription factor, putative [Ricinus communis]
16 Hb_005582_030 0.1323621405 - - PREDICTED: protein N-lysine methyltransferase METTL21A-like [Jatropha curcas]
17 Hb_010174_180 0.1330320694 - - protein binding protein, putative [Ricinus communis]
18 Hb_015001_030 0.1337752561 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
19 Hb_002316_020 0.1352244225 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
20 Hb_001135_010 0.1354766203 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]

Gene co-expression network

sample Hb_002503_050 Hb_002503_050 Hb_000189_160 Hb_000189_160 Hb_002503_050--Hb_000189_160 Hb_014250_010 Hb_014250_010 Hb_002503_050--Hb_014250_010 Hb_001345_020 Hb_001345_020 Hb_002503_050--Hb_001345_020 Hb_000046_430 Hb_000046_430 Hb_002503_050--Hb_000046_430 Hb_000760_080 Hb_000760_080 Hb_002503_050--Hb_000760_080 Hb_009554_030 Hb_009554_030 Hb_002503_050--Hb_009554_030 Hb_003224_010 Hb_003224_010 Hb_000189_160--Hb_003224_010 Hb_000189_160--Hb_000046_430 Hb_000189_160--Hb_014250_010 Hb_002601_140 Hb_002601_140 Hb_000189_160--Hb_002601_140 Hb_001135_010 Hb_001135_010 Hb_000189_160--Hb_001135_010 Hb_000096_210 Hb_000096_210 Hb_014250_010--Hb_000096_210 Hb_014250_010--Hb_009554_030 Hb_015001_030 Hb_015001_030 Hb_014250_010--Hb_015001_030 Hb_005766_010 Hb_005766_010 Hb_014250_010--Hb_005766_010 Hb_000866_190 Hb_000866_190 Hb_014250_010--Hb_000866_190 Hb_001638_150 Hb_001638_150 Hb_014250_010--Hb_001638_150 Hb_001349_020 Hb_001349_020 Hb_001345_020--Hb_001349_020 Hb_001345_020--Hb_014250_010 Hb_005679_110 Hb_005679_110 Hb_001345_020--Hb_005679_110 Hb_001345_020--Hb_001638_150 Hb_000567_060 Hb_000567_060 Hb_001345_020--Hb_000567_060 Hb_003849_030 Hb_003849_030 Hb_000046_430--Hb_003849_030 Hb_000046_430--Hb_003224_010 Hb_000689_010 Hb_000689_010 Hb_000046_430--Hb_000689_010 Hb_030982_050 Hb_030982_050 Hb_000046_430--Hb_030982_050 Hb_004611_050 Hb_004611_050 Hb_000046_430--Hb_004611_050 Hb_001048_100 Hb_001048_100 Hb_000760_080--Hb_001048_100 Hb_000024_130 Hb_000024_130 Hb_000760_080--Hb_000024_130 Hb_005568_050 Hb_005568_050 Hb_000760_080--Hb_005568_050 Hb_033312_050 Hb_033312_050 Hb_000760_080--Hb_033312_050 Hb_000731_210 Hb_000731_210 Hb_000760_080--Hb_000731_210 Hb_004122_060 Hb_004122_060 Hb_009554_030--Hb_004122_060 Hb_059000_010 Hb_059000_010 Hb_009554_030--Hb_059000_010 Hb_009554_030--Hb_000096_210 Hb_009554_030--Hb_000866_190 Hb_015306_010 Hb_015306_010 Hb_009554_030--Hb_015306_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00766554 1.07171 2.48296 1.3444 0.00717455 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0869823 0.0273782 0 1.91871 1.36804

CAGE analysis