Hb_002505_040

Information

Type -
Description -
Location Contig2505: 92614-101103
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002505_040 0.0 - - -
2 Hb_000009_590 0.1191758345 - - PREDICTED: prolyl endopeptidase-like isoform X1 [Jatropha curcas]
3 Hb_000059_040 0.126990089 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
4 Hb_002073_040 0.1328035824 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000008_330 0.1480169388 - - 60S ribosomal protein L12A [Hevea brasiliensis]
6 Hb_007803_010 0.1502312903 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
7 Hb_003073_200 0.1511702358 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
8 Hb_000352_090 0.1537519473 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
9 Hb_002890_030 0.1540277272 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
10 Hb_001829_010 0.1553277609 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
11 Hb_000291_190 0.1566651453 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
12 Hb_000059_210 0.1568963735 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001584_170 0.1586250672 - - neutral/alkaline invertase [Manihot esculenta]
14 Hb_000861_070 0.1588870659 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000236_370 0.1620931293 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
16 Hb_173953_010 0.1623999693 - - hypothetical protein RCOM_1267370 [Ricinus communis]
17 Hb_000621_080 0.1635009213 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011612_010 0.1646265202 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
19 Hb_002977_010 0.1651062273 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
20 Hb_029584_080 0.1653029067 - - serine acetyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002505_040 Hb_002505_040 Hb_000009_590 Hb_000009_590 Hb_002505_040--Hb_000009_590 Hb_000059_040 Hb_000059_040 Hb_002505_040--Hb_000059_040 Hb_002073_040 Hb_002073_040 Hb_002505_040--Hb_002073_040 Hb_000008_330 Hb_000008_330 Hb_002505_040--Hb_000008_330 Hb_007803_010 Hb_007803_010 Hb_002505_040--Hb_007803_010 Hb_003073_200 Hb_003073_200 Hb_002505_040--Hb_003073_200 Hb_000009_590--Hb_003073_200 Hb_000041_220 Hb_000041_220 Hb_000009_590--Hb_000041_220 Hb_006816_320 Hb_006816_320 Hb_000009_590--Hb_006816_320 Hb_000236_300 Hb_000236_300 Hb_000009_590--Hb_000236_300 Hb_000398_190 Hb_000398_190 Hb_000009_590--Hb_000398_190 Hb_000059_040--Hb_002073_040 Hb_000059_040--Hb_000009_590 Hb_004586_190 Hb_004586_190 Hb_000059_040--Hb_004586_190 Hb_010315_050 Hb_010315_050 Hb_000059_040--Hb_010315_050 Hb_006588_090 Hb_006588_090 Hb_000059_040--Hb_006588_090 Hb_002073_040--Hb_000009_590 Hb_004129_130 Hb_004129_130 Hb_002073_040--Hb_004129_130 Hb_029866_130 Hb_029866_130 Hb_002073_040--Hb_029866_130 Hb_000009_550 Hb_000009_550 Hb_002073_040--Hb_000009_550 Hb_142439_010 Hb_142439_010 Hb_000008_330--Hb_142439_010 Hb_004724_320 Hb_004724_320 Hb_000008_330--Hb_004724_320 Hb_001047_100 Hb_001047_100 Hb_000008_330--Hb_001047_100 Hb_000861_070 Hb_000861_070 Hb_000008_330--Hb_000861_070 Hb_075481_030 Hb_075481_030 Hb_000008_330--Hb_075481_030 Hb_105386_010 Hb_105386_010 Hb_000008_330--Hb_105386_010 Hb_007747_060 Hb_007747_060 Hb_007803_010--Hb_007747_060 Hb_007803_010--Hb_003073_200 Hb_000421_070 Hb_000421_070 Hb_007803_010--Hb_000421_070 Hb_007803_010--Hb_000008_330 Hb_002081_130 Hb_002081_130 Hb_007803_010--Hb_002081_130 Hb_003464_110 Hb_003464_110 Hb_007803_010--Hb_003464_110 Hb_000645_150 Hb_000645_150 Hb_003073_200--Hb_000645_150 Hb_000002_330 Hb_000002_330 Hb_003073_200--Hb_000002_330 Hb_000236_370 Hb_000236_370 Hb_003073_200--Hb_000236_370 Hb_000421_120 Hb_000421_120 Hb_003073_200--Hb_000421_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11492 0.184878 0.0420347 0.033395 0.235132 0.237831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124666 0.137322 0.0742128 0.0781172 0

CAGE analysis