Hb_002506_020

Information

Type -
Description -
Location Contig2506: 56210-61695
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13540g
description POPTRDRAFT_821105; hypothetical protein
nr
ID XP_011046428.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
swissprot
ID O49605
description Peptidyl-prolyl cis-trans isomerase CYP21-1 OS=Arabidopsis thaliana GN=CYP21-1 PE=2 SV=1
trembl
ID B9HR79
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13540g PE=3 SV=1
Gene Ontology
ID GO:0005794
description peptidyl-prolyl cis-trans isomerase cyp21-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26210: 56629-57776 , PASA_asmbl_26211: 58083-58570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002506_020 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
2 Hb_003195_070 0.0592182025 - - Uncharacterized protein isoform 1 [Theobroma cacao]
3 Hb_000025_140 0.067181585 - - las1-like family protein [Populus trichocarpa]
4 Hb_000451_010 0.0720168334 - - secretory carrier membrane protein, putative [Ricinus communis]
5 Hb_000395_170 0.0723283042 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
6 Hb_048937_040 0.0734344078 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
7 Hb_007904_200 0.0742676923 - - protein binding protein, putative [Ricinus communis]
8 Hb_148912_010 0.0767422929 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002149_020 0.0811273044 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
10 Hb_000428_050 0.0819589263 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
11 Hb_000010_330 0.0821126712 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
12 Hb_004109_090 0.0850718288 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_003030_070 0.0852220195 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
14 Hb_000010_090 0.0859902179 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
15 Hb_003929_160 0.0861068183 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
16 Hb_000172_370 0.0871620849 - - -
17 Hb_007594_030 0.0881371158 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
18 Hb_000645_050 0.0883595852 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
19 Hb_009048_040 0.0885570477 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
20 Hb_001252_100 0.0891205653 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]

Gene co-expression network

sample Hb_002506_020 Hb_002506_020 Hb_003195_070 Hb_003195_070 Hb_002506_020--Hb_003195_070 Hb_000025_140 Hb_000025_140 Hb_002506_020--Hb_000025_140 Hb_000451_010 Hb_000451_010 Hb_002506_020--Hb_000451_010 Hb_000395_170 Hb_000395_170 Hb_002506_020--Hb_000395_170 Hb_048937_040 Hb_048937_040 Hb_002506_020--Hb_048937_040 Hb_007904_200 Hb_007904_200 Hb_002506_020--Hb_007904_200 Hb_000010_330 Hb_000010_330 Hb_003195_070--Hb_000010_330 Hb_003195_070--Hb_007904_200 Hb_003195_070--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_003195_070--Hb_004109_090 Hb_002200_080 Hb_002200_080 Hb_003195_070--Hb_002200_080 Hb_001369_420 Hb_001369_420 Hb_000025_140--Hb_001369_420 Hb_000025_140--Hb_048937_040 Hb_000025_140--Hb_007904_200 Hb_006185_050 Hb_006185_050 Hb_000025_140--Hb_006185_050 Hb_000645_050 Hb_000645_050 Hb_000025_140--Hb_000645_050 Hb_000618_040 Hb_000618_040 Hb_000451_010--Hb_000618_040 Hb_011671_240 Hb_011671_240 Hb_000451_010--Hb_011671_240 Hb_004907_080 Hb_004907_080 Hb_000451_010--Hb_004907_080 Hb_000451_010--Hb_007904_200 Hb_000451_010--Hb_000010_330 Hb_032208_090 Hb_032208_090 Hb_000451_010--Hb_032208_090 Hb_003175_010 Hb_003175_010 Hb_000395_170--Hb_003175_010 Hb_000926_280 Hb_000926_280 Hb_000395_170--Hb_000926_280 Hb_148912_010 Hb_148912_010 Hb_000395_170--Hb_148912_010 Hb_000395_170--Hb_048937_040 Hb_000089_220 Hb_000089_220 Hb_000395_170--Hb_000089_220 Hb_000395_170--Hb_004109_090 Hb_010457_030 Hb_010457_030 Hb_048937_040--Hb_010457_030 Hb_048937_040--Hb_003175_010 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_048937_040--Hb_000010_330 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040 Hb_007904_200--Hb_000010_330 Hb_007904_200--Hb_010457_030 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.931 9.38935 13.6548 21.4052 36.8557 37.6319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2883 28.6237 30.081 11.4571 12.2173

CAGE analysis