Hb_002508_020

Information

Type -
Description -
Location Contig2508: 39330-40888
Sequence    

Annotation

kegg
ID vvi:100266800
description SNF1-related protein kinase regulatory subunit beta-1
nr
ID XP_012074706.1
description PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
swissprot
ID Q84VQ1
description SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1
trembl
ID A0A067LMG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14907 PE=4 SV=1
Gene Ontology
ID GO:0009744
description snf1-related protein kinase regulatory subunit beta-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26216: 26983-41019
cDNA
(Sanger)
(ID:Location)		 050_L12.ab1: 27433-40960

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002508_020 0.0 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
2 Hb_165350_010 0.0994458203 - - unnamed protein product [Triticum aestivum]
3 Hb_000592_080 0.1031638354 - - PREDICTED: thymidylate kinase [Jatropha curcas]
4 Hb_000358_150 0.1074494962 - - hypothetical protein VITISV_012309 [Vitis vinifera]
5 Hb_002997_100 0.1091760582 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
6 Hb_001252_080 0.1120318331 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
7 Hb_000710_020 0.118294299 - - PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Populus euphratica]
8 Hb_001348_050 0.1192709422 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008085_030 0.1215575624 - - PREDICTED: uncharacterized protein LOC105639414 [Jatropha curcas]
10 Hb_140171_010 0.1216570648 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
11 Hb_168000_010 0.1252199142 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
12 Hb_000057_040 0.1272308826 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_002587_020 0.1279698569 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_002200_130 0.1302499721 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
15 Hb_001752_030 0.1304530437 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
16 Hb_000207_390 0.1308990901 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
17 Hb_022256_040 0.131657101 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
18 Hb_000618_030 0.1319835795 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
19 Hb_008643_060 0.1334766387 - - unnamed protein product [Coffea canephora]
20 Hb_002609_110 0.1335202289 - - hypothetical protein JCGZ_08497 [Jatropha curcas]

Gene co-expression network

sample Hb_002508_020 Hb_002508_020 Hb_165350_010 Hb_165350_010 Hb_002508_020--Hb_165350_010 Hb_000592_080 Hb_000592_080 Hb_002508_020--Hb_000592_080 Hb_000358_150 Hb_000358_150 Hb_002508_020--Hb_000358_150 Hb_002997_100 Hb_002997_100 Hb_002508_020--Hb_002997_100 Hb_001252_080 Hb_001252_080 Hb_002508_020--Hb_001252_080 Hb_000710_020 Hb_000710_020 Hb_002508_020--Hb_000710_020 Hb_000270_780 Hb_000270_780 Hb_165350_010--Hb_000270_780 Hb_000861_070 Hb_000861_070 Hb_165350_010--Hb_000861_070 Hb_011612_010 Hb_011612_010 Hb_165350_010--Hb_011612_010 Hb_165350_010--Hb_000592_080 Hb_012193_010 Hb_012193_010 Hb_165350_010--Hb_012193_010 Hb_008864_110 Hb_008864_110 Hb_000592_080--Hb_008864_110 Hb_002400_470 Hb_002400_470 Hb_000592_080--Hb_002400_470 Hb_001348_050 Hb_001348_050 Hb_000592_080--Hb_001348_050 Hb_001047_030 Hb_001047_030 Hb_000592_080--Hb_001047_030 Hb_000976_320 Hb_000976_320 Hb_000592_080--Hb_000976_320 Hb_000592_080--Hb_000710_020 Hb_000358_150--Hb_001252_080 Hb_001369_420 Hb_001369_420 Hb_000358_150--Hb_001369_420 Hb_000676_110 Hb_000676_110 Hb_000358_150--Hb_000676_110 Hb_001493_030 Hb_001493_030 Hb_000358_150--Hb_001493_030 Hb_000933_090 Hb_000933_090 Hb_000358_150--Hb_000933_090 Hb_000051_070 Hb_000051_070 Hb_000358_150--Hb_000051_070 Hb_022256_040 Hb_022256_040 Hb_002997_100--Hb_022256_040 Hb_182026_010 Hb_182026_010 Hb_002997_100--Hb_182026_010 Hb_000078_130 Hb_000078_130 Hb_002997_100--Hb_000078_130 Hb_000230_330 Hb_000230_330 Hb_002997_100--Hb_000230_330 Hb_000733_060 Hb_000733_060 Hb_002997_100--Hb_000733_060 Hb_012654_010 Hb_012654_010 Hb_002997_100--Hb_012654_010 Hb_002609_110 Hb_002609_110 Hb_001252_080--Hb_002609_110 Hb_001252_080--Hb_000676_110 Hb_000057_040 Hb_000057_040 Hb_001252_080--Hb_000057_040 Hb_001252_080--Hb_001369_420 Hb_000207_390 Hb_000207_390 Hb_001252_080--Hb_000207_390 Hb_001439_150 Hb_001439_150 Hb_000710_020--Hb_001439_150 Hb_006185_050 Hb_006185_050 Hb_000710_020--Hb_006185_050 Hb_003464_050 Hb_003464_050 Hb_000710_020--Hb_003464_050 Hb_001305_010 Hb_001305_010 Hb_000710_020--Hb_001305_010 Hb_003175_010 Hb_003175_010 Hb_000710_020--Hb_003175_010 Hb_007951_060 Hb_007951_060 Hb_000710_020--Hb_007951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8611 7.20848 11.9396 10.1166 32.8032 28.8676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4187 13.7892 23.0415 10.0853 3.70469

CAGE analysis