Hb_002518_020

Information

Type -
Description -
Location Contig2518: 23750-26608
Sequence    

Annotation

kegg
ID rcu:RCOM_0731430
description hypothetical protein
nr
ID XP_012068573.1
description PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S389
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0731430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26262: 24638-25121 , PASA_asmbl_26263: 24213-25981 , PASA_asmbl_26264: 26077-26687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_020 0.0 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
2 Hb_005000_280 0.0777654887 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
3 Hb_001769_070 0.0833250584 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
4 Hb_004558_060 0.091310809 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
5 Hb_000076_280 0.0936591416 - - PREDICTED: pectinesterase-like [Populus euphratica]
6 Hb_002171_020 0.0958835863 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
7 Hb_000329_010 0.1010294548 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_027405_010 0.1011038411 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
9 Hb_001117_180 0.1025891138 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
10 Hb_027400_020 0.1043769936 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
11 Hb_000834_130 0.1056906661 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001645_030 0.1075163929 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
13 Hb_154038_040 0.1101268255 - - nutrient reservoir, putative [Ricinus communis]
14 Hb_029142_040 0.110505503 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
15 Hb_155444_010 0.1108040229 - - -
16 Hb_000568_020 0.1110862979 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
17 Hb_002809_080 0.1112113204 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004031_050 0.112753948 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
19 Hb_002522_040 0.1167172755 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
20 Hb_000181_260 0.1177129388 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]

Gene co-expression network

sample Hb_002518_020 Hb_002518_020 Hb_005000_280 Hb_005000_280 Hb_002518_020--Hb_005000_280 Hb_001769_070 Hb_001769_070 Hb_002518_020--Hb_001769_070 Hb_004558_060 Hb_004558_060 Hb_002518_020--Hb_004558_060 Hb_000076_280 Hb_000076_280 Hb_002518_020--Hb_000076_280 Hb_002171_020 Hb_002171_020 Hb_002518_020--Hb_002171_020 Hb_000329_010 Hb_000329_010 Hb_002518_020--Hb_000329_010 Hb_002809_080 Hb_002809_080 Hb_005000_280--Hb_002809_080 Hb_005000_280--Hb_001769_070 Hb_005000_280--Hb_000076_280 Hb_005000_280--Hb_000329_010 Hb_027400_020 Hb_027400_020 Hb_005000_280--Hb_027400_020 Hb_001769_070--Hb_000076_280 Hb_001769_070--Hb_027400_020 Hb_001769_070--Hb_000329_010 Hb_000419_140 Hb_000419_140 Hb_001769_070--Hb_000419_140 Hb_001369_190 Hb_001369_190 Hb_004558_060--Hb_001369_190 Hb_009736_020 Hb_009736_020 Hb_004558_060--Hb_009736_020 Hb_004558_060--Hb_002171_020 Hb_005648_020 Hb_005648_020 Hb_004558_060--Hb_005648_020 Hb_002918_270 Hb_002918_270 Hb_004558_060--Hb_002918_270 Hb_000076_280--Hb_027400_020 Hb_000076_280--Hb_000419_140 Hb_000076_280--Hb_000329_010 Hb_002616_020 Hb_002616_020 Hb_000076_280--Hb_002616_020 Hb_000076_280--Hb_002809_080 Hb_009189_100 Hb_009189_100 Hb_002171_020--Hb_009189_100 Hb_000329_720 Hb_000329_720 Hb_002171_020--Hb_000329_720 Hb_178049_010 Hb_178049_010 Hb_002171_020--Hb_178049_010 Hb_000005_360 Hb_000005_360 Hb_002171_020--Hb_000005_360 Hb_015934_080 Hb_015934_080 Hb_002171_020--Hb_015934_080 Hb_000329_010--Hb_002809_080 Hb_031224_010 Hb_031224_010 Hb_000329_010--Hb_031224_010 Hb_149055_010 Hb_149055_010 Hb_000329_010--Hb_149055_010 Hb_000329_010--Hb_000419_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0367417 0.451971 0.714492 2.39971 0.00656512 0.0130884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0125223 0 0.521779 0.480113

CAGE analysis