Hb_002518_040

Information

Type -
Description -
Location Contig2518: 36582-41298
Sequence    

Annotation

kegg
ID rcu:RCOM_0731410
description receptor protein kinase, putative
nr
ID XP_012068547.1
description PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
swissprot
ID Q9FHD7
description Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1
trembl
ID A0A067LPV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08551 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable serine threonine-protein kinase at5g41260

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26267: 36795-41273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_040 0.0 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
2 Hb_000722_030 0.0499931015 - - putative plant disease resistance family protein [Populus trichocarpa]
3 Hb_003101_020 0.075589492 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
4 Hb_001439_050 0.0808019427 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
5 Hb_001258_130 0.0810776862 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
6 Hb_007313_030 0.0830383614 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
7 Hb_027684_010 0.0844805644 - - hypothetical protein RCOM_0504250 [Ricinus communis]
8 Hb_023582_010 0.0857658984 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003207_120 0.0869502292 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
10 Hb_002609_120 0.0877283824 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
11 Hb_011671_050 0.0884657069 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
12 Hb_000086_470 0.089100106 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
13 Hb_001511_210 0.0895513088 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
14 Hb_016297_010 0.0900904853 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
15 Hb_002066_100 0.0941956981 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
16 Hb_005892_050 0.095110326 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
17 Hb_000120_340 0.097774479 - - Cucumisin precursor, putative [Ricinus communis]
18 Hb_002835_310 0.100457709 - - ATP binding protein, putative [Ricinus communis]
19 Hb_001638_200 0.1017120492 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
20 Hb_004202_030 0.101841633 - - PREDICTED: uncharacterized protein LOC103449702 [Malus domestica]

Gene co-expression network

sample Hb_002518_040 Hb_002518_040 Hb_000722_030 Hb_000722_030 Hb_002518_040--Hb_000722_030 Hb_003101_020 Hb_003101_020 Hb_002518_040--Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_002518_040--Hb_001439_050 Hb_001258_130 Hb_001258_130 Hb_002518_040--Hb_001258_130 Hb_007313_030 Hb_007313_030 Hb_002518_040--Hb_007313_030 Hb_027684_010 Hb_027684_010 Hb_002518_040--Hb_027684_010 Hb_023582_010 Hb_023582_010 Hb_000722_030--Hb_023582_010 Hb_002066_100 Hb_002066_100 Hb_000722_030--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_000722_030--Hb_016297_010 Hb_019053_040 Hb_019053_040 Hb_000722_030--Hb_019053_040 Hb_000722_030--Hb_027684_010 Hb_003101_020--Hb_001439_050 Hb_108576_020 Hb_108576_020 Hb_003101_020--Hb_108576_020 Hb_062807_010 Hb_062807_010 Hb_003101_020--Hb_062807_010 Hb_003101_020--Hb_002066_100 Hb_003101_020--Hb_000722_030 Hb_001439_050--Hb_062807_010 Hb_001439_050--Hb_108576_020 Hb_001439_050--Hb_007313_030 Hb_011671_050 Hb_011671_050 Hb_001439_050--Hb_011671_050 Hb_001511_210 Hb_001511_210 Hb_001258_130--Hb_001511_210 Hb_001258_130--Hb_016297_010 Hb_105148_020 Hb_105148_020 Hb_001258_130--Hb_105148_020 Hb_000139_040 Hb_000139_040 Hb_001258_130--Hb_000139_040 Hb_001258_130--Hb_002066_100 Hb_001258_130--Hb_000722_030 Hb_007313_030--Hb_108576_020 Hb_000086_470 Hb_000086_470 Hb_007313_030--Hb_000086_470 Hb_007313_030--Hb_003101_020 Hb_007313_030--Hb_062807_010 Hb_001655_080 Hb_001655_080 Hb_027684_010--Hb_001655_080 Hb_027684_010--Hb_002066_100 Hb_021443_060 Hb_021443_060 Hb_027684_010--Hb_021443_060 Hb_000358_160 Hb_000358_160 Hb_027684_010--Hb_000358_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.013092 1.05884 14.0775 7.74923 0.0211369 0.028693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.916749 6.65129

CAGE analysis