Hb_002518_050

Information

Type -
Description -
Location Contig2518: 77479-80647
Sequence    

Annotation

kegg
ID rcu:RCOM_0731400
description mitochondrial import inner membrane translocase subunit tim10, putative
nr
ID XP_012068534.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
swissprot
ID Q9ZW33
description Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis thaliana GN=TIM10 PE=1 SV=1
trembl
ID B9S386
description Mitochondrial import inner membrane translocase subunit tim10, putative OS=Ricinus communis GN=RCOM_0731400 PE=4 SV=1
Gene Ontology
ID GO:0005758
description mitochondrial import inner membrane translocase subunit tim10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26269: 77445-80638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_050 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
2 Hb_000510_110 0.0590453129 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
3 Hb_012573_070 0.0601947078 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003018_120 0.0672105134 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
5 Hb_165132_010 0.0680143245 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
6 Hb_000970_010 0.0716000081 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
7 Hb_001818_020 0.0749676653 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
8 Hb_004931_090 0.0768098309 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
9 Hb_000630_060 0.0774099486 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
10 Hb_032202_090 0.0775133911 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
11 Hb_001638_260 0.0775916008 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
12 Hb_000545_150 0.079229866 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
13 Hb_001235_190 0.0793589664 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
14 Hb_134949_020 0.079723896 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
15 Hb_001314_100 0.0798353419 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
16 Hb_007741_050 0.0809124071 - - vesicle-associated membrane protein, putative [Ricinus communis]
17 Hb_033594_110 0.0816913424 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
18 Hb_181288_010 0.081838541 - - rac-GTP binding protein, putative [Ricinus communis]
19 Hb_010407_040 0.0822258424 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
20 Hb_004204_120 0.0828720741 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_002518_050 Hb_002518_050 Hb_000510_110 Hb_000510_110 Hb_002518_050--Hb_000510_110 Hb_012573_070 Hb_012573_070 Hb_002518_050--Hb_012573_070 Hb_003018_120 Hb_003018_120 Hb_002518_050--Hb_003018_120 Hb_165132_010 Hb_165132_010 Hb_002518_050--Hb_165132_010 Hb_000970_010 Hb_000970_010 Hb_002518_050--Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_002518_050--Hb_001818_020 Hb_000029_200 Hb_000029_200 Hb_000510_110--Hb_000029_200 Hb_004931_090 Hb_004931_090 Hb_000510_110--Hb_004931_090 Hb_001300_040 Hb_001300_040 Hb_000510_110--Hb_001300_040 Hb_000510_110--Hb_012573_070 Hb_003683_110 Hb_003683_110 Hb_000510_110--Hb_003683_110 Hb_000545_150 Hb_000545_150 Hb_012573_070--Hb_000545_150 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_012573_070--Hb_003683_110 Hb_011381_060 Hb_011381_060 Hb_003018_120--Hb_011381_060 Hb_000798_030 Hb_000798_030 Hb_003018_120--Hb_000798_030 Hb_001377_150 Hb_001377_150 Hb_003018_120--Hb_001377_150 Hb_000023_230 Hb_000023_230 Hb_003018_120--Hb_000023_230 Hb_004204_120 Hb_004204_120 Hb_003018_120--Hb_004204_120 Hb_134949_020 Hb_134949_020 Hb_165132_010--Hb_134949_020 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_000970_010--Hb_001818_020 Hb_008173_090 Hb_008173_090 Hb_000970_010--Hb_008173_090 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_001584_070 Hb_001584_070 Hb_000970_010--Hb_001584_070 Hb_000970_010--Hb_000545_150 Hb_001818_020--Hb_000545_150 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.8027 18.9361 30.833 35.0408 47.0095 53.6423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.0735 129.415 46.4304 24.9022 15.0052

CAGE analysis