Hb_002518_080

Information

Type -
Description -
Location Contig2518: 90901-94398
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25400g
description POPTRDRAFT_706064; hypothetical protein
nr
ID XP_012079393.1
description PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12525 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_080 0.0 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
2 Hb_022425_040 0.0596896003 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
3 Hb_000127_180 0.0672490044 - - 40S ribosomal protein S18, putative [Ricinus communis]
4 Hb_000217_030 0.0718312459 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
5 Hb_015279_010 0.0736531827 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
6 Hb_114893_030 0.0797736117 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
7 Hb_001504_110 0.0798188681 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
8 Hb_000260_550 0.0801503765 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
9 Hb_001979_040 0.0805751887 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
10 Hb_000815_060 0.0811516444 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
11 Hb_000667_070 0.0826572197 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_004116_190 0.0860791492 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
13 Hb_003787_010 0.0870299039 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
14 Hb_000920_110 0.0870546442 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
15 Hb_001832_060 0.0878359432 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
16 Hb_001484_070 0.08978298 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001123_130 0.0901316274 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
18 Hb_005784_110 0.0905521267 - - PREDICTED: dolichol-phosphate mannosyltransferase-like isoform X1 [Citrus sinensis]
19 Hb_002995_020 0.0919661573 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
20 Hb_000025_620 0.0928560769 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]

Gene co-expression network

sample Hb_002518_080 Hb_002518_080 Hb_022425_040 Hb_022425_040 Hb_002518_080--Hb_022425_040 Hb_000127_180 Hb_000127_180 Hb_002518_080--Hb_000127_180 Hb_000217_030 Hb_000217_030 Hb_002518_080--Hb_000217_030 Hb_015279_010 Hb_015279_010 Hb_002518_080--Hb_015279_010 Hb_114893_030 Hb_114893_030 Hb_002518_080--Hb_114893_030 Hb_001504_110 Hb_001504_110 Hb_002518_080--Hb_001504_110 Hb_000815_060 Hb_000815_060 Hb_022425_040--Hb_000815_060 Hb_022425_040--Hb_015279_010 Hb_022425_040--Hb_000217_030 Hb_022425_040--Hb_000127_180 Hb_001832_060 Hb_001832_060 Hb_022425_040--Hb_001832_060 Hb_002768_030 Hb_002768_030 Hb_000127_180--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_000127_180--Hb_001780_040 Hb_000127_180--Hb_001504_110 Hb_000127_180--Hb_001832_060 Hb_000025_620 Hb_000025_620 Hb_000127_180--Hb_000025_620 Hb_003787_010 Hb_003787_010 Hb_000217_030--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_000217_030--Hb_004116_190 Hb_002995_020 Hb_002995_020 Hb_000217_030--Hb_002995_020 Hb_001691_140 Hb_001691_140 Hb_000217_030--Hb_001691_140 Hb_015279_010--Hb_003787_010 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_015279_010--Hb_004116_190 Hb_000920_110 Hb_000920_110 Hb_015279_010--Hb_000920_110 Hb_011671_100 Hb_011671_100 Hb_015279_010--Hb_011671_100 Hb_114893_030--Hb_022425_040 Hb_000258_350 Hb_000258_350 Hb_114893_030--Hb_000258_350 Hb_000917_110 Hb_000917_110 Hb_114893_030--Hb_000917_110 Hb_114893_030--Hb_000127_180 Hb_114893_030--Hb_015279_010 Hb_000656_240 Hb_000656_240 Hb_001504_110--Hb_000656_240 Hb_001504_110--Hb_000025_620 Hb_001504_110--Hb_004116_190 Hb_000020_060 Hb_000020_060 Hb_001504_110--Hb_000020_060 Hb_001504_110--Hb_000920_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.904 10.3202 14.8342 12.8647 10.2893 14.7083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6929 44.6611 18.5171 14.4481 7.78387

CAGE analysis