Hb_002518_090

Information

Type -
Description -
Location Contig2518: 102206-103867
Sequence    

Annotation

kegg
ID cic:CICLE_v10028436mg
description hypothetical protein
nr
ID XP_012068515.1
description PREDICTED: tubulin beta-2 chain [Jatropha curcas]
swissprot
ID Q9ASR0
description Tubulin beta-3 chain OS=Arabidopsis thaliana GN=TUBB3 PE=2 SV=2
trembl
ID A0A067LDL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08548 PE=3 SV=1
Gene Ontology
ID GO:0005794
description tubulin beta-2 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26274: 102213-103967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_090 0.0 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
2 Hb_172706_020 0.1076039583 - - PREDICTED: protein ABIL2 [Jatropha curcas]
3 Hb_000940_210 0.1300034662 - - cyclophilin [Hevea brasiliensis]
4 Hb_023226_030 0.1356595292 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
5 Hb_000220_110 0.1362441317 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
6 Hb_004883_020 0.1387527205 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
7 Hb_000309_030 0.1449951703 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
8 Hb_034507_060 0.146558667 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
9 Hb_000307_220 0.1477222899 - - oxidoreductase family protein [Populus trichocarpa]
10 Hb_000934_150 0.1515851187 - - hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
11 Hb_004545_040 0.1537661008 - - PREDICTED: coiled-coil domain-containing protein SCD2-like [Jatropha curcas]
12 Hb_000581_030 0.1560889057 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000116_240 0.1569438357 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
14 Hb_000175_470 0.1595605251 - - lactoylglutathione lyase, putative [Ricinus communis]
15 Hb_000172_280 0.1614399399 - - aspartate aminotransferase, putative [Ricinus communis]
16 Hb_000237_020 0.1623680234 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
17 Hb_143766_080 0.1629816321 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
18 Hb_002627_020 0.163643036 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
19 Hb_000310_120 0.1652702396 - - PREDICTED: probable transaldolase [Jatropha curcas]
20 Hb_005694_180 0.1662387138 - - PREDICTED: cytochrome b5 [Jatropha curcas]

Gene co-expression network

sample Hb_002518_090 Hb_002518_090 Hb_172706_020 Hb_172706_020 Hb_002518_090--Hb_172706_020 Hb_000940_210 Hb_000940_210 Hb_002518_090--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_002518_090--Hb_023226_030 Hb_000220_110 Hb_000220_110 Hb_002518_090--Hb_000220_110 Hb_004883_020 Hb_004883_020 Hb_002518_090--Hb_004883_020 Hb_000309_030 Hb_000309_030 Hb_002518_090--Hb_000309_030 Hb_172706_020--Hb_000940_210 Hb_172706_020--Hb_023226_030 Hb_034507_060 Hb_034507_060 Hb_172706_020--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_172706_020--Hb_004218_130 Hb_172706_020--Hb_000309_030 Hb_002374_270 Hb_002374_270 Hb_000940_210--Hb_002374_270 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000581_030 Hb_000581_030 Hb_000940_210--Hb_000581_030 Hb_003430_080 Hb_003430_080 Hb_000940_210--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000940_210--Hb_001053_210 Hb_023226_030--Hb_034507_060 Hb_023226_030--Hb_003430_080 Hb_005694_180 Hb_005694_180 Hb_023226_030--Hb_005694_180 Hb_023226_030--Hb_000309_030 Hb_001195_420 Hb_001195_420 Hb_023226_030--Hb_001195_420 Hb_001616_070 Hb_001616_070 Hb_000220_110--Hb_001616_070 Hb_003227_010 Hb_003227_010 Hb_000220_110--Hb_003227_010 Hb_000139_140 Hb_000139_140 Hb_000220_110--Hb_000139_140 Hb_000172_280 Hb_000172_280 Hb_000220_110--Hb_000172_280 Hb_000683_050 Hb_000683_050 Hb_000220_110--Hb_000683_050 Hb_003683_130 Hb_003683_130 Hb_000220_110--Hb_003683_130 Hb_007575_030 Hb_007575_030 Hb_004883_020--Hb_007575_030 Hb_001754_050 Hb_001754_050 Hb_004883_020--Hb_001754_050 Hb_004883_020--Hb_000309_030 Hb_003226_090 Hb_003226_090 Hb_004883_020--Hb_003226_090 Hb_004297_090 Hb_004297_090 Hb_004883_020--Hb_004297_090 Hb_000098_180 Hb_000098_180 Hb_004883_020--Hb_000098_180 Hb_000116_240 Hb_000116_240 Hb_000309_030--Hb_000116_240 Hb_000261_310 Hb_000261_310 Hb_000309_030--Hb_000261_310 Hb_000318_170 Hb_000318_170 Hb_000309_030--Hb_000318_170 Hb_010050_020 Hb_010050_020 Hb_000309_030--Hb_010050_020 Hb_000590_070 Hb_000590_070 Hb_000309_030--Hb_000590_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.71388 10.0253 41.9798 44.6595 1.63984 2.85435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.46791 7.95318 2.91156 38.6624 14.2747

CAGE analysis